Study Phenotyping Study: Chabrioux

Identification

Name
Chabrioux
Identifier
dXJuOklOUkFFLVVSR0kvc3R1ZHkvRlJfUFNfMDM=
Source
URGI GnpIS logo
Data link
Link to this study on URGI GnpIS
Project name
GenTree
Seasons
2016-2017
Location name
Chabrioux (FR_PS_03)
Data files

Genotype

Accession number Name Taxon
FR_PS_03_01 FR_PS_03_01 Pinus sylvestris
FR_PS_03_02 FR_PS_03_02 Pinus sylvestris
FR_PS_03_03 FR_PS_03_03 Pinus sylvestris
FR_PS_03_04 FR_PS_03_04 Pinus sylvestris
FR_PS_03_05 FR_PS_03_05 Pinus sylvestris
FR_PS_03_06 FR_PS_03_06 Pinus sylvestris
FR_PS_03_07 FR_PS_03_07 Pinus sylvestris
FR_PS_03_08 FR_PS_03_08 Pinus sylvestris
FR_PS_03_09 FR_PS_03_09 Pinus sylvestris
FR_PS_03_10 FR_PS_03_10 Pinus sylvestris
FR_PS_03_11 FR_PS_03_11 Pinus sylvestris
FR_PS_03_12 FR_PS_03_12 Pinus sylvestris
FR_PS_03_13 FR_PS_03_13 Pinus sylvestris
FR_PS_03_14 FR_PS_03_14 Pinus sylvestris
FR_PS_03_15 FR_PS_03_15 Pinus sylvestris
FR_PS_03_16 FR_PS_03_16 Pinus sylvestris
FR_PS_03_17 FR_PS_03_17 Pinus sylvestris
FR_PS_03_18 FR_PS_03_18 Pinus sylvestris
FR_PS_03_19 FR_PS_03_19 Pinus sylvestris
FR_PS_03_20 FR_PS_03_20 Pinus sylvestris
FR_PS_03_21 FR_PS_03_21 Pinus sylvestris
FR_PS_03_22 FR_PS_03_22 Pinus sylvestris
FR_PS_03_23 FR_PS_03_23 Pinus sylvestris
FR_PS_03_24 FR_PS_03_24 Pinus sylvestris
FR_PS_03_25 FR_PS_03_25 Pinus sylvestris
FR_PS_03_26 FR_PS_03_26 Pinus sylvestris

Variables

Variable ID Variable short name Variable long name Ontology name Trait description
CO_357:0000003 ANG_n5 Branch angle - rating on 5 Woody Plant Ontology Assessment of the branches angle
CO_357:0000007 BarkT Bark thickness Woody Plant Ontology Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark
CO_357:0000021 COM Comments Woody Plant Ontology Observations on the tree, unsystematic and somewhat anecdotal
CO_357:0000022 DBH Tree diameter Woody Plant Ontology Diameter of the tree main stem
CO_357:0000035 FLX_n5 Flexuosity - rating on 5 Woody Plant Ontology Assessment of the flexuosity of the tree
CO_357:0000038 FO_index Forking index Woody Plant Ontology Combination of the forking position and the number of forks, the highest index being for non-forking trees and for trees with a lower number of forks at a higher position
CO_357:0000060 NBF Fruits/Cones number Woody Plant Ontology Assessment of the fructification
CO_357:0000078 SEX Sex determination Woody Plant Ontology Determination of the tree sex
CO_357:0000080 SLA Specific leaf area Woody Plant Ontology Leaf area per unit of leaf dry mass
CO_357:0000085 Delta13C Leaf carbone isotope discrimination Woody Plant Ontology Carbon isotope (C13) composition in leaves
CO_357:0000095 BarkT_mean Bark thickness mean Woody Plant Ontology Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark
CO_357:0000096 NBF_mean Fruits/Cones number mean Woody Plant Ontology Assessment of the fructification
CO_357:0000097 RECD Harvest date Woody Plant Ontology Identification of the tree on which samples were collected
CO_357:0000098 DIST Distance individual/neighbor Woody Plant Ontology Distance between the sampled tree and its closest neighbors
CO_357:0000099 NCI Competition index Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000100 canopy_projection Canopy projection Woody Plant Ontology Length of the maximum extension of canopy branches from one end to the other (crown diameter)
CO_357:0000101 crown_size Crown size Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000102 soil_depth Soil depth Woody Plant Ontology Soil depth around the tree
CO_357:0000103 stone_content Soil stone content Woody Plant Ontology Stone content in the soil around the tree
CO_357:0000104 slope Individual slope Woody Plant Ontology Slope angle at the location of the tree
CO_357:0000106 elevation Elevation Woody Plant Ontology Elevation above sea level of the tree level
CO_357:0000107 cover1 Independant Vegetation/Rock cover Woody Plant Ontology Assessment of the amount of vegetation or rock cover on the ground around the tree
CO_357:0000109 regeneration Natural regeneration Woody Plant Ontology Abundance of natural regeneration around the tree
CO_357:0000111 HTm Tree total height in m Woody Plant Ontology Total height of the tree, from the ground to the tallest part of the crown
CO_357:0000257 LA Leaf area Woody Plant Ontology Total area of the leaf
CO_357:0000510 %C Leaf carbon content Woody Plant Ontology Carbon content in leaves
CO_357:0000511 %N Leaf nitrogen content Woody Plant Ontology Nitrogen content in leaves
CO_357:0000512 C/N Leaf carbon-to-nitrogen ratio Woody Plant Ontology Ratio of the mass of carbon to the mass of nitrogen in leaves. It can, amongst other things, be used in analysing sediments and compost.
CO_357:0000513 Delta15N Leaf nitrogen isotope discrimination Woody Plant Ontology Nitrogen isotope (N15) composition in leaves
CO_357:0000552 comp.index.a Competition index a Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000553 comp.index.b Competition index b Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000554 comp.index.c Competition index c Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000555 comp.index.d Competition index d Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000556 basal_area basal area Woody Plant Ontology
CO_357:0000557 crown_ellipse crown ellipse Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000558 crown_round crown round Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000559 multistem multistem tree Woody Plant Ontology Multistem tree
CO_357:0000560 neighbor conspecific neighbor Woody Plant Ontology Conspecific neighbor
CO_357:0000561 aspect2 Individual aspect Woody Plant Ontology The direction (azimuth) that the slope faces at the location of the tree

Data Set

Name Type Linked studies identifier
GenTree Network Paterzell Kazitiskis Porquerolles Kühkopf Benasque Eslida (wet pair) Prati di Tivo Rossiglione Collobrières (Maures, bas) Aridaia1/ Central Macedonia Kassandreia/Chalkidiki Ordimnos/Lesvos Frillensee 2 Frillensee 1 Peitz Fünfeichen Ranta-Halola, Savonlinna Koiravaara, Rovaniemi Ranta-Halola, Savonlinna Punteniellu Vareilles Isola (haut) Mont Ventoux (N4) Saint-Guilhem-le-désert Sainte-Baume Reiter Alpe Waldsieversdorf Sieväkari, Rovaniemi Koivikkoniemi, Rovaniemi Mont Ventoux (Vtx263) Isola (bas) Mont Ventoux (N1) Coscione (bas) Restonica Fiumorbu Ceppo Sierra Cebollera Navafría Collobrières (Maures, haut) Aridaia2/ Central Macedonia Olympos/ Lesvos Salzach Godendorf Ranta-Halola, Savonlinna Coscione (haut) Grono / Gallina Sierre / Ochsenboden Lommiswil / Vorberg Bettlach / Wagnerbann Grono / Gallina Trimmis / Rodauen Fully / Les Planches Große Deffernik, Bavarian Forest National Park Filzwald, Bavarian Forest National Park Pollino La Zelata Loibltal, Ferlach Hirschwang, Neunkirchen Hirschwang, Neunkirchen Roudsea Howe Wood Beinn Eighe Woodhall Dean Roudsea Vouillé Moulière Tsakalos/ Southern Rodopi Østmarka Smoldalen Østmarka Biescas Valle del Ara Valle del Ara Moncayo Moncayo Bujaruelo Zuera Zuera Alzira Montán Cabrera Gredos (Navalacruz) Cuéllar Huéscar Huéscar Rott Joachimsthal Méolans-Revel (bas) Iragna / Citto Grono / Alp d'Albion Maggia / Someo Martigny / Le Bourg Hagenstein, Kellerwald Croda da Lago Ombrone Viktring, Klagenfurt Hirschwang, Neunkirchen Hirschwang, Neunkirchen Abernethy Abernethy Brånakollene Arnaia1/ Chalkidiki Elatia/ Southern Rodopi Smoldalen Bujaruelo Carratraca Alberche La Alfranca Navafría Bavella (Corse, haut) Aspra spitia/ Peloponnese Chelona/ Chalkidiki Gallkos river/ Central Macedonia Marcinkonys Bargailiai Veisejai-Seirijai Nidzica Dechow Méolans-Revel (haut) Isone / Cima di Fuori Zuoz / God Giavagl Berg am Irchel / Hochwacht Traddelkopf, Kellerwald Croda da Lago Merse Urwald Kahlkogel, Villach Kalwang, Leoben Rumerhedge Roudsea Våle Arnaia2/ Chalkidiki Fteri/ Central Macedonia Skiftenes Cómpeta Cómpeta Arenas de San Pedro Arenas de San Pedro SPM Ramière Arlanc Husbondliden Brattby Osbecks_Bokskogar Jämntlandskälen Bäcksjön Fogdaröd Kolleberga_Ekbacken Fonte allo Squarto Sirente Pietracamela Prati di Tivo Tatti Monterufoli Val di Rhemes Croda da Lago Otricoli Gargano Sospirolo Aspromonte Magra/Montemarcello Montignoso/Apuane Parma Sakiai Boréon Glarus Nord / Rautialp Berg am Irchel / Irchelebni Wastlhütte, Bavarian Forest National Park Bosco Siro Negri Østmarka Viktring, Klagenfurt Zirknitz, Großkirchheim Ritini/ Central Macedonia Nedre Timenes Cuéllar Sainte Luce sur Loire Die Sjörup Umgransele_Slåttertjärn Särö Västerskog Aspromonte Tocchi Parma Bavella (Corse, bas) Louvro/ Peloponnese Taygetos-Pirofilakio/ Peloponnese Moni Ag. Dionisiou/Mt Olympus Prienai-Verkne Bois des Ayes Buerchen / Buerchneralp Wald / Scheidegg Falkenstein, Bavarian Forest National Park Nes Brandvik Cuéllar Goudet Murlo Lacanau (Landes, sec) Mont Iremal Prokopi/Euboea Artemisia/ Peloponnese Musteika Font-Blanche Zonser Grind Valle del Ara Eslida (dry pair) Aspromonte Arenzano Lège (Landes, humide) Valley of the Yuruzan river;

Contact

Role Name Email Institution
DataProvider Catherine BASTIEN catherine.bastien_inrae.fr BioForA - UMR Biologie intégrée pour la valorisation de la diversité des arbres et de la Forêt
DataProvider Marc VILLAR marc.villar_inrae.fr BioForA - UMR Biologie intégrée pour la valorisation de la diversité des arbres et de la Forêt