Study Phenotyping Study: Koiravaara, Rovaniemi

Identification

Name
Koiravaara, Rovaniemi
Identifier
dXJuOklOUkFFLVVSR0kvc3R1ZHkvRklfUFNfMTg=
Source
URGI GnpIS logo
Data link
Link to this study on URGI GnpIS
Project name
GenTree
Active
No
Seasons
2016-2017
Location name
Koiravaara, Rovaniemi (FI_PS_18)
Data files

Genotype

Accession number Name Taxon
FI_PS_18_01 FI_PS_18_01 Pinus sylvestris
FI_PS_18_02 FI_PS_18_02 Pinus sylvestris
FI_PS_18_03 FI_PS_18_03 Pinus sylvestris
FI_PS_18_04 FI_PS_18_04 Pinus sylvestris
FI_PS_18_05 FI_PS_18_05 Pinus sylvestris
FI_PS_18_06 FI_PS_18_06 Pinus sylvestris
FI_PS_18_07 FI_PS_18_07 Pinus sylvestris
FI_PS_18_08 FI_PS_18_08 Pinus sylvestris
FI_PS_18_09 FI_PS_18_09 Pinus sylvestris
FI_PS_18_10 FI_PS_18_10 Pinus sylvestris
FI_PS_18_11 FI_PS_18_11 Pinus sylvestris
FI_PS_18_12 FI_PS_18_12 Pinus sylvestris
FI_PS_18_13 FI_PS_18_13 Pinus sylvestris
FI_PS_18_14 FI_PS_18_14 Pinus sylvestris
FI_PS_18_15 FI_PS_18_15 Pinus sylvestris
FI_PS_18_16 FI_PS_18_16 Pinus sylvestris
FI_PS_18_17 FI_PS_18_17 Pinus sylvestris
FI_PS_18_18 FI_PS_18_18 Pinus sylvestris
FI_PS_18_19 FI_PS_18_19 Pinus sylvestris
FI_PS_18_20 FI_PS_18_20 Pinus sylvestris
FI_PS_18_21 FI_PS_18_21 Pinus sylvestris
FI_PS_18_22 FI_PS_18_22 Pinus sylvestris
FI_PS_18_23 FI_PS_18_23 Pinus sylvestris
FI_PS_18_24 FI_PS_18_24 Pinus sylvestris
FI_PS_18_25 FI_PS_18_25 Pinus sylvestris

Variables

Variable ID Variable short name Variable long name Ontology name Trait description
CO_357:0000003 Branch angle - rating on 5 ANG_n5 Woody Plant Ontology Assessment of the branches angle
CO_357:0000007 Bark thickness BarkT Woody Plant Ontology Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark
CO_357:0000021 Comments COM Woody Plant Ontology Observations on the tree, unsystematic and somewhat anecdotal
CO_357:0000022 Tree diameter DBH Woody Plant Ontology Diameter of the tree main stem
CO_357:0000035 Flexuosity - rating on 5 FLX_n5 Woody Plant Ontology Assessment of the flexuosity of the tree
CO_357:0000038 Forking index FO_index Woody Plant Ontology Combination of the forking position and the number of forks, the highest index being for non-forking trees and for trees with a lower number of forks at a higher position
CO_357:0000060 Fruits/Cones number NBF Woody Plant Ontology Assessment of the fructification
CO_357:0000080 Specific leaf area SLA Woody Plant Ontology Leaf area per unit of leaf dry mass
CO_357:0000085 Leaf carbone isotope discrimination Delta13C Woody Plant Ontology Carbon isotope (C13) composition in leaves
CO_357:0000095 Bark thickness mean BarkT_mean Woody Plant Ontology Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark
CO_357:0000096 Fruits/Cones number mean NBF_mean Woody Plant Ontology Assessment of the fructification
CO_357:0000097 Harvest date RECD Woody Plant Ontology Identification of the tree on which samples were collected
CO_357:0000098 Distance individual/neighbor DIST Woody Plant Ontology Distance between the sampled tree and its closest neighbors
CO_357:0000099 Competition index NCI Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000100 Canopy projection canopy_projection Woody Plant Ontology Length of the maximum extension of canopy branches from one end to the other (crown diameter)
CO_357:0000101 Crown size crown_size Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000102 Soil depth soil_depth Woody Plant Ontology Soil depth around the tree
CO_357:0000103 Soil stone content stone_content Woody Plant Ontology Stone content in the soil around the tree
CO_357:0000104 Individual slope slope Woody Plant Ontology Slope angle at the location of the tree
CO_357:0000106 Elevation elevation Woody Plant Ontology Elevation above sea level of the tree level
CO_357:0000108 Relative Vegetation/Rock cover cover2 Woody Plant Ontology Assessment of the amount of vegetation or rock cover on the ground around the tree
CO_357:0000109 Natural regeneration regeneration Woody Plant Ontology Abundance of natural regeneration around the tree
CO_357:0000110 Photo photo Woody Plant Ontology Name of the file or archive where photo(s) of the tree can be found
CO_357:0000111 Tree total height in m HTm Woody Plant Ontology Total height of the tree, from the ground to the tallest part of the crown
CO_357:0000257 Leaf area LA Woody Plant Ontology Total area of the leaf
CO_357:0000510 Percentage leaf carbon content %C Woody Plant Ontology Carbon content in leaves
CO_357:0000511 Percentage leaf nitrogen content %N Woody Plant Ontology Nitrogen content in leaves
CO_357:0000512 Leaf carbon-to-nitrogen ratio C/N Woody Plant Ontology Ratio of the mass of carbon to the mass of nitrogen in leaves. It can, amongst other things, be used in analysing sediments and compost.
CO_357:0000513 Leaf nitrogen isotope discrimination Delta15N Woody Plant Ontology Nitrogen isotope (N15) composition in leaves
CO_357:0000552 Competition index a comp.index.a Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000553 Competition index b comp.index.b Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000554 Competition index c comp.index.c Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000555 Competition index d comp.index.d Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000556 basal area basal_area Woody Plant Ontology Basal area
CO_357:0000557 crown ellipse crown_ellipse Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000558 crown round crown_round Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000559 multistem tree multistem Woody Plant Ontology Multistem tree
CO_357:0000560 conspecific neighbor neighbor Woody Plant Ontology Conspecific neighbor
CO_357:0000561 Individual aspect - Orientation aspect2 Woody Plant Ontology The direction (azimuth) that the slope faces at the location of the tree

Data Set

Name Type Linked studies identifier
GenTree Network Paterzell Kazitiskis Porquerolles Kühkopf Benasque Eslida (wet pair) Prati di Tivo Rossiglione Collobrières (Maures, bas) Aridaia1/ Central Macedonia Kassandreia/Chalkidiki Ordimnos/Lesvos Frillensee 2 Frillensee 1 Peitz Fünfeichen Ranta-Halola, Savonlinna Ranta-Halola, Savonlinna Punteniellu Vareilles Isola (haut) Mont Ventoux (N4) Saint-Guilhem-le-désert Sainte-Baume Reiter Alpe Waldsieversdorf Sieväkari, Rovaniemi Koivikkoniemi, Rovaniemi Mont Ventoux (Vtx263) Isola (bas) Mont Ventoux (N1) Coscione (bas) Restonica Fiumorbu Ceppo Sierra Cebollera Navafría Collobrières (Maures, haut) Aridaia2/ Central Macedonia Olympos/ Lesvos Salzach Godendorf Ranta-Halola, Savonlinna Coscione (haut) Grono / Gallina Sierre / Ochsenboden Lommiswil / Vorberg Bettlach / Wagnerbann Grono / Gallina Trimmis / Rodauen Fully / Les Planches Große Deffernik, Bavarian Forest National Park Filzwald, Bavarian Forest National Park Pollino La Zelata Loibltal, Ferlach Hirschwang, Neunkirchen Hirschwang, Neunkirchen Roudsea Howe Wood Beinn Eighe Woodhall Dean Roudsea Vouillé Moulière Tsakalos/ Southern Rodopi Østmarka Smoldalen Østmarka Biescas Valle del Ara Valle del Ara Moncayo Moncayo Bujaruelo Zuera Zuera Alzira Montán Cabrera Gredos (Navalacruz) Cuéllar Huéscar Huéscar Rott Joachimsthal Méolans-Revel (bas) Iragna / Citto Grono / Alp d'Albion Maggia / Someo Martigny / Le Bourg Hagenstein, Kellerwald Croda da Lago Ombrone Viktring, Klagenfurt Hirschwang, Neunkirchen Hirschwang, Neunkirchen Abernethy Abernethy Brånakollene Arnaia1/ Chalkidiki Elatia/ Southern Rodopi Smoldalen Bujaruelo Carratraca Alberche La Alfranca Navafría Bavella (Corse, haut) Aspra spitia/ Peloponnese Chelona/ Chalkidiki Gallkos river/ Central Macedonia Marcinkonys Bargailiai Veisejai-Seirijai Nidzica Dechow Méolans-Revel (haut) Isone / Cima di Fuori Zuoz / God Giavagl Berg am Irchel / Hochwacht Traddelkopf, Kellerwald Croda da Lago Merse Urwald Kahlkogel, Villach Kalwang, Leoben Rumerhedge Roudsea Våle Arnaia2/ Chalkidiki Fteri/ Central Macedonia Skiftenes Cómpeta Cómpeta Arenas de San Pedro Arenas de San Pedro SPM Ramière Chabrioux Arlanc Husbondliden Brattby Osbecks_Bokskogar Jämntlandskälen Bäcksjön Fogdaröd Kolleberga_Ekbacken Fonte allo Squarto Sirente Pietracamela Prati di Tivo Tatti Monterufoli Val di Rhemes Croda da Lago Otricoli Gargano Sospirolo Aspromonte Magra/Montemarcello Montignoso/Apuane Parma Sakiai Boréon Glarus Nord / Rautialp Berg am Irchel / Irchelebni Wastlhütte, Bavarian Forest National Park Bosco Siro Negri Østmarka Viktring, Klagenfurt Zirknitz, Großkirchheim Ritini/ Central Macedonia Nedre Timenes Cuéllar Sainte Luce sur Loire Die Sjörup Umgransele_Slåttertjärn Särö Västerskog Aspromonte Tocchi Parma Bavella (Corse, bas) Louvro/ Peloponnese Taygetos-Pirofilakio/ Peloponnese Moni Ag. Dionisiou/Mt Olympus Prienai-Verkne Bois des Ayes Buerchen / Buerchneralp Wald / Scheidegg Falkenstein, Bavarian Forest National Park Nes Brandvik Cuéllar Goudet Murlo Lacanau (Landes, sec) Mont Iremal Prokopi/Euboea Artemisia/ Peloponnese Musteika Font-Blanche Zonser Grind Valle del Ara Eslida (dry pair) Aspromonte Arenzano Lège (Landes, humide) Valley of the Yuruzan river;

Contact

Role Name Email Institution
DataProvider Tanja PYHÄJÄRVI tanja.pyhajarvi_oulu.fi University of Oulu