Study Phenotyping Study: La Alfranca

Identification

Name
La Alfranca
Identifier
dXJuOklOUkFFLVVSR0kvc3R1ZHkvRVNfUE9fMDI=
Source
URGI GnpIS logo
Data link
Link to this study on URGI GnpIS
Project name
GenTree
Active
No
Seasons
2016-2017
Location name
La Alfranca (ES_PO_02)
Data files

Genotype

Accession number Name Taxon
ES_PO_02_01 ES_PO_02_01 Populus nigra
ES_PO_02_02 ES_PO_02_02 Populus nigra
ES_PO_02_03 ES_PO_02_03 Populus nigra
ES_PO_02_04 ES_PO_02_04 Populus nigra
ES_PO_02_05 ES_PO_02_05 Populus nigra
ES_PO_02_06 ES_PO_02_06 Populus nigra
ES_PO_02_07 ES_PO_02_07 Populus nigra
ES_PO_02_08 ES_PO_02_08 Populus nigra
ES_PO_02_09 ES_PO_02_09 Populus nigra
ES_PO_02_10 ES_PO_02_10 Populus nigra
ES_PO_02_11 ES_PO_02_11 Populus nigra
ES_PO_02_12 ES_PO_02_12 Populus nigra
ES_PO_02_13 ES_PO_02_13 Populus nigra
ES_PO_02_14 ES_PO_02_14 Populus nigra
ES_PO_02_15 ES_PO_02_15 Populus nigra
ES_PO_02_16 ES_PO_02_16 Populus nigra
ES_PO_02_17 ES_PO_02_17 Populus nigra
ES_PO_02_18 ES_PO_02_18 Populus nigra
ES_PO_02_19 ES_PO_02_19 Populus nigra
ES_PO_02_20 ES_PO_02_20 Populus nigra
ES_PO_02_21 ES_PO_02_21 Populus nigra
ES_PO_02_22 ES_PO_02_22 Populus nigra
ES_PO_02_23 ES_PO_02_23 Populus nigra
ES_PO_02_24 ES_PO_02_24 Populus nigra
ES_PO_02_25 ES_PO_02_25 Populus nigra

Variables

Variable ID Variable short name Variable long name Ontology name Trait description
CO_357:0000003 Branch angle - rating on 5 ANG_n5 Woody Plant Ontology Assessment of the branches angle
CO_357:0000007 Bark thickness BarkT Woody Plant Ontology Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark
CO_357:0000021 Comments COM Woody Plant Ontology Observations on the tree, unsystematic and somewhat anecdotal
CO_357:0000022 Tree diameter DBH Woody Plant Ontology Diameter of the tree main stem
CO_357:0000035 Flexuosity - rating on 5 FLX_n5 Woody Plant Ontology Assessment of the flexuosity of the tree
CO_357:0000038 Forking index FO_index Woody Plant Ontology Combination of the forking position and the number of forks, the highest index being for non-forking trees and for trees with a lower number of forks at a higher position
CO_357:0000078 Sex determination SEX Woody Plant Ontology Determination of the tree sex
CO_357:0000080 Specific leaf area SLA Woody Plant Ontology Leaf area per unit of leaf dry mass
CO_357:0000085 Leaf carbone isotope discrimination Delta13C Woody Plant Ontology Carbon isotope (C13) composition in leaves
CO_357:0000095 Bark thickness mean BarkT_mean Woody Plant Ontology Asessment of the thickness of the part of the stem that is external to the wood or xylem, including the vascular cambium: the bark
CO_357:0000097 Harvest date RECD Woody Plant Ontology Identification of the tree on which samples were collected
CO_357:0000098 Distance individual/neighbor DIST Woody Plant Ontology Distance between the sampled tree and its closest neighbors
CO_357:0000099 Competition index NCI Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000100 Canopy projection canopy_projection Woody Plant Ontology Length of the maximum extension of canopy branches from one end to the other (crown diameter)
CO_357:0000101 Crown size crown_size Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000102 Soil depth soil_depth Woody Plant Ontology Soil depth around the tree
CO_357:0000103 Soil stone content stone_content Woody Plant Ontology Stone content in the soil around the tree
CO_357:0000104 Individual slope slope Woody Plant Ontology Slope angle at the location of the tree
CO_357:0000105 Individual aspect - Gradient aspect Woody Plant Ontology The direction (azimuth) that the slope faces at the location of the tree
CO_357:0000106 Elevation elevation Woody Plant Ontology Elevation above sea level of the tree level
CO_357:0000107 Independant Vegetation/Rock cover cover1 Woody Plant Ontology Assessment of the amount of vegetation or rock cover on the ground around the tree
CO_357:0000109 Natural regeneration regeneration Woody Plant Ontology Abundance of natural regeneration around the tree
CO_357:0000111 Tree total height in m HTm Woody Plant Ontology Total height of the tree, from the ground to the tallest part of the crown
CO_357:0000257 Leaf area LA Woody Plant Ontology Total area of the leaf
CO_357:0000510 Percentage leaf carbon content %C Woody Plant Ontology Carbon content in leaves
CO_357:0000511 Percentage leaf nitrogen content %N Woody Plant Ontology Nitrogen content in leaves
CO_357:0000512 Leaf carbon-to-nitrogen ratio C/N Woody Plant Ontology Ratio of the mass of carbon to the mass of nitrogen in leaves. It can, amongst other things, be used in analysing sediments and compost.
CO_357:0000513 Leaf nitrogen isotope discrimination Delta15N Woody Plant Ontology Nitrogen isotope (N15) composition in leaves
CO_357:0000552 Competition index a comp.index.a Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000553 Competition index b comp.index.b Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000554 Competition index c comp.index.c Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000555 Competition index d comp.index.d Woody Plant Ontology Assessment of the competition situation at the tree level
CO_357:0000556 basal area basal_area Woody Plant Ontology Basal area
CO_357:0000557 crown ellipse crown_ellipse Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000558 crown round crown_round Woody Plant Ontology Footprint or plan area of the crown of a tree expressed as crown width
CO_357:0000559 multistem tree multistem Woody Plant Ontology Multistem tree
CO_357:0000560 conspecific neighbor neighbor Woody Plant Ontology Conspecific neighbor
CO_357:0000561 Individual aspect - Orientation aspect2 Woody Plant Ontology The direction (azimuth) that the slope faces at the location of the tree

Data Set

Name Type Linked studies identifier
GenTree Network Paterzell Kazitiskis Porquerolles Kühkopf Benasque Eslida (wet pair) Prati di Tivo Rossiglione Collobrières (Maures, bas) Aridaia1/ Central Macedonia Kassandreia/Chalkidiki Ordimnos/Lesvos Frillensee 2 Frillensee 1 Peitz Fünfeichen Ranta-Halola, Savonlinna Koiravaara, Rovaniemi Ranta-Halola, Savonlinna Punteniellu Vareilles Isola (haut) Mont Ventoux (N4) Saint-Guilhem-le-désert Sainte-Baume Reiter Alpe Waldsieversdorf Sieväkari, Rovaniemi Koivikkoniemi, Rovaniemi Mont Ventoux (Vtx263) Isola (bas) Mont Ventoux (N1) Coscione (bas) Restonica Fiumorbu Ceppo Sierra Cebollera Navafría Collobrières (Maures, haut) Aridaia2/ Central Macedonia Olympos/ Lesvos Salzach Godendorf Ranta-Halola, Savonlinna Coscione (haut) Grono / Gallina Sierre / Ochsenboden Lommiswil / Vorberg Bettlach / Wagnerbann Grono / Gallina Trimmis / Rodauen Fully / Les Planches Große Deffernik, Bavarian Forest National Park Filzwald, Bavarian Forest National Park Pollino La Zelata Loibltal, Ferlach Hirschwang, Neunkirchen Hirschwang, Neunkirchen Roudsea Howe Wood Beinn Eighe Woodhall Dean Roudsea Vouillé Moulière Tsakalos/ Southern Rodopi Østmarka Smoldalen Østmarka Biescas Valle del Ara Valle del Ara Moncayo Moncayo Bujaruelo Zuera Zuera Alzira Montán Cabrera Gredos (Navalacruz) Cuéllar Huéscar Huéscar Rott Joachimsthal Méolans-Revel (bas) Iragna / Citto Grono / Alp d'Albion Maggia / Someo Martigny / Le Bourg Hagenstein, Kellerwald Croda da Lago Ombrone Viktring, Klagenfurt Hirschwang, Neunkirchen Hirschwang, Neunkirchen Abernethy Abernethy Brånakollene Arnaia1/ Chalkidiki Elatia/ Southern Rodopi Smoldalen Bujaruelo Carratraca Alberche Navafría Bavella (Corse, haut) Aspra spitia/ Peloponnese Chelona/ Chalkidiki Gallkos river/ Central Macedonia Marcinkonys Bargailiai Veisejai-Seirijai Nidzica Dechow Méolans-Revel (haut) Isone / Cima di Fuori Zuoz / God Giavagl Berg am Irchel / Hochwacht Traddelkopf, Kellerwald Croda da Lago Merse Urwald Kahlkogel, Villach Kalwang, Leoben Rumerhedge Roudsea Våle Arnaia2/ Chalkidiki Fteri/ Central Macedonia Skiftenes Cómpeta Cómpeta Arenas de San Pedro Arenas de San Pedro SPM Ramière Chabrioux Arlanc Husbondliden Brattby Osbecks_Bokskogar Jämntlandskälen Bäcksjön Fogdaröd Kolleberga_Ekbacken Fonte allo Squarto Sirente Pietracamela Prati di Tivo Tatti Monterufoli Val di Rhemes Croda da Lago Otricoli Gargano Sospirolo Aspromonte Magra/Montemarcello Montignoso/Apuane Parma Sakiai Boréon Glarus Nord / Rautialp Berg am Irchel / Irchelebni Wastlhütte, Bavarian Forest National Park Bosco Siro Negri Østmarka Viktring, Klagenfurt Zirknitz, Großkirchheim Ritini/ Central Macedonia Nedre Timenes Cuéllar Sainte Luce sur Loire Die Sjörup Umgransele_Slåttertjärn Särö Västerskog Aspromonte Tocchi Parma Bavella (Corse, bas) Louvro/ Peloponnese Taygetos-Pirofilakio/ Peloponnese Moni Ag. Dionisiou/Mt Olympus Prienai-Verkne Bois des Ayes Buerchen / Buerchneralp Wald / Scheidegg Falkenstein, Bavarian Forest National Park Nes Brandvik Cuéllar Goudet Murlo Lacanau (Landes, sec) Mont Iremal Prokopi/Euboea Artemisia/ Peloponnese Musteika Font-Blanche Zonser Grind Valle del Ara Eslida (dry pair) Aspromonte Arenzano Lège (Landes, humide) Valley of the Yuruzan river;

Contact

Role Name Email Institution
DataProvider Juan José ROBLEDO-ARNUNCIO jjrobledo_gmail.com Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria
DataProvider Raquel BENAVIDES rbenavidescalvo_gmail.com Consejo Superior de Investigaciones Científicas
DataProvider Bárbara CARVALHO BARBOSA babic.barbosa_mncn.csic.es Consejo Superior de Investigaciones Científicas