Study Phenotyping Study: Clonal test of mapping pedigree 3P_A4

Identification

Name
Clonal test of mapping pedigree 3P_A4
Identifier
dXJuOklOUkFFLVVSR0kvc3R1ZHkvQm91cnJhbjJfM1BfQTQ=
Source
URGI GnpIS logo
Data link
Link to this study on URGI GnpIS
Project name
GEN4X
Seasons
2001,2002,2003,2004,2005,2006,2007,2008,2012,2013,2014,2015,2016
Location name
Bourran2
Data files

Genotype

Accession number Name Taxon
Q100 Q100 Quercus robur
Q101 Q101 Quercus robur
Q102 Q102 Quercus robur
Q103 Q103 Quercus robur
Q104 Q104 Quercus robur
Q105 Q105 Quercus robur
Q106 Q106 Quercus robur
Q107 Q107 Quercus robur
Q108 Q108 Quercus robur
Q109 Q109 Quercus robur
Q110 Q110 Quercus robur
Q111 Q111 Quercus robur
Q112 Q112 Quercus robur
Q113 Q113 Quercus robur
Q115 Q115 Quercus robur
Q116 Q116 Quercus robur
Q117 Q117 Quercus robur
Q118 Q118 Quercus robur
Q119 Q119 Quercus robur
Q120 Q120 Quercus robur
Q121 Q121 Quercus robur
Q122 Q122 Quercus robur
Q123 Q123 Quercus robur
Q124 Q124 Quercus robur
Q125 Q125 Quercus robur
Q126 Q126 Quercus robur
Q127 Q127 Quercus robur
Q128 Q128 Quercus robur
Q129 Q129 Quercus robur
Q130 Q130 Quercus robur
Q131 Q131 Quercus robur
Q132 Q132 Quercus robur
Q133 Q133 Quercus robur
Q134 Q134 Quercus robur
Q136 Q136 Quercus robur
Q138 Q138 Quercus robur
Q140 Q140 Quercus robur
Q141 Q141 Quercus robur
Q142 Q142 Quercus robur
Q151 Q151 Quercus robur
Q152 Q152 Quercus robur
Q153 Q153 Quercus robur
Q154 Q154 Quercus robur
Q156 Q156 Quercus robur
Q157 Q157 Quercus robur
Q158 Q158 Quercus robur
Q159 Q159 Quercus robur
Q160 Q160 Quercus robur
Q162 Q162 Quercus robur
Q163 Q163 Quercus robur
Q164 Q164 Quercus robur
Q165 Q165 Quercus robur
Q166 Q166 Quercus robur
Q167 Q167 Quercus robur
Q168 Q168 Quercus robur
Q169 Q169 Quercus robur
Q170 Q170 Quercus robur
Q171 Q171 Quercus robur
Q172 Q172 Quercus robur
Q173 Q173 Quercus robur
Q174 Q174 Quercus robur
Q175 Q175 Quercus robur
Q176 Q176 Quercus robur
Q177 Q177 Quercus robur
Q178 Q178 Quercus robur
Q179 Q179 Quercus robur
Q180 Q180 Quercus robur
Q181 Q181 Quercus robur
Q184 Q184 Quercus robur
Q185 Q185 Quercus robur
Q186 Q186 Quercus robur
Q188 Q188 Quercus robur
Q189 Q189 Quercus robur
Q190 Q190 Quercus robur
Q192 Q192 Quercus robur
Q193 Q193 Quercus robur
Q194 Q194 Quercus robur
Q195 Q195 Quercus robur
Q196 Q196 Quercus robur
Q199 Q199 Quercus robur
Q200 Q200 Quercus robur
Q202 Q202 Quercus robur
Q203 Q203 Quercus robur
Q204 Q204 Quercus robur
Q205 Q205 Quercus robur
Q206 Q206 Quercus robur
Q207 Q207 Quercus robur
Q208 Q208 Quercus robur
Q209 Q209 Quercus robur
Q210 Q210 Quercus robur
Q211 Q211 Quercus robur
Q212 Q212 Quercus robur
Q213 Q213 Quercus robur
Q214 Q214 Quercus robur
Q215 Q215 Quercus robur
Q216 Q216 Quercus robur
Q217 Q217 Quercus robur
Q218 Q218 Quercus robur
Q219 Q219 Quercus robur
Q220 Q220 Quercus robur

Variables

Variable ID Variable short name Variable long name Ontology name Trait description
CO_357:0000010 BF_score_BL Broadleaves budflush scoring Woody Plant Ontology Assessment of bud break
CO_357:0000022 DBH Tree diameter Woody Plant Ontology Diameter of the tree main stem
CO_357:0000048 HT Tree total height Woody Plant Ontology Total height of the tree, from the ground to the tallest part of the crown
CO_357:0000076 SEN Senescence Woody Plant Ontology Assessment of the senescence, the growth phase in a plant or plant part (such as a leaf) from full maturity to death
CO_357:0000085 Delta13C Leaf carbone isotope discrimination Woody Plant Ontology Carbon isotope (C13) composition in leaves
CO_357:0000159 LNCa Leaf nitrogen content per leaf area Woody Plant Ontology Nitrogen content in leaves
CO_357:0000160 LNCm Leaf nitrogen content per leaf dry mass Woody Plant Ontology Nitrogen content in leaves
CO_357:0000228 nFork Forks number - x-ray Woody Plant Ontology Assessment of forks quantity, appearance of sequential branches with an inclination angle greater than 45°
CO_357:0000255 LMA Leaf mass per leaf area Woody Plant Ontology Leaf mass per leaf area
CO_357:0000258 LS Leaf surface Woody Plant Ontology Leaf surface
CO_357:0000287 LN/LC Ratio leaf nitrogen to leaf carbon Woody Plant Ontology Ratio leaf nitrogen to leaf carbon
CO_357:0000291 aSeqBC Sequential branches angle Woody Plant Ontology Mean inclination angle per log of the sequential branches
CO_357:0000292 vSeqBC Sequential branches volume Woody Plant Ontology Assessment of the sequential branches volume
CO_357:0000293 nSeqBC Number of sequential branches Woody Plant Ontology Assessment of sequential branches quantity, shoots produced throughout tree development within a short time period after the bearer growth unit has formed
CO_357:0000294 nEpis Number of epicormics Woody Plant Ontology Assessment of epicormics quantity. These formations are appearing on trunks or master branches surfaces of living trees, resulting from buds repelled by cambial growth at the periphery on the trunk.
CO_357:0000295 nEpiBC Number of epicormic branches Woody Plant Ontology Assessment of epicormic branches quantity, shoots growing from a dormant bud lying underneath the bark of an old structure
CO_357:0000296 vEpiBC Epicormic branch volume Woody Plant Ontology Assessment of the volume of epicormic branches
CO_357:0000297 rEpiBC Epicormic branches per epicormics Woody Plant Ontology Ratio between epicormic branches and epicormics
CO_357:0000298 nP Number of primary branching Woody Plant Ontology Assessment of primary branching quantity
CO_357:0000299 nPriBD Number of primary buds Woody Plant Ontology Assessment of primary buds quantity. The primary bud is the first to grow after the winter dormant period and is the most likely to develop a robust shoot during the growing season.
CO_357:0000300 nSecBD Number of secondary buds Woody Plant Ontology Assessment of secondary buds quantity. The secondary bud is present next to the primary bud within the compound bud and it is dormant until it is needed by the plant as a back up when the primary bud fails.
CO_357:0000301 nLBD Number of latent buds Woody Plant Ontology Assessment of epicormic buds quantity, a dormant/latent bud having reached the bark as its growth has been delayed for a rather long time
CO_357:0000302 nPriLBD Number of latent primary buds Woody Plant Ontology Assessment of epicormic primary buds quantity, a primary having reached the bark as its growth has been delayed for a rather long time
CO_357:0000303 nSecLBD Number of latent secondary buds Woody Plant Ontology Assessment of epicormic secondary buds quantity, a secondary bud having reached the bark as its growth has been delayed for a rather long time
CO_357:0000306 LC Leaf color Woody Plant Ontology Leaf color in autumn
CO_357:0000310 ST Leaf Staining Woody Plant Ontology Leaf staining

Data Set

Name Type Linked studies identifier
Biogeco Network Outbred pedigree G2 from a controlled cross of two intra-provenance (Landes x Landes) hybrid trees / G2_9.106.3 x 10.159.3 Inbred pedigree classical F2 population resulting from the selfing of a single inter-provenance (Landes x Corsica) hybrid tree / F2_H12 x H12 Clonal test of mapping pedigree 3P_A4 Clonal test of mapping pedigree Qs28_Qs21 Clonal test of mapping pedigree 3P_A4 Clonal test of mapping pedigree 27P_Qs28 Clonal test of mapping pedigree 11P_Qs29 Clonal test of mapping pedigree 11P_Qs28 Clonal test of mapping pedigree 11P_11P Clonal test of mapping pedigree 3P_A4 Clonal test of mapping pedigree 3P_A4;

Contact

Role Name Email Institution
Manager Kremer ANTOINE antoine.kremer_inrae.fr BIOGECO - Biodiversité Gènes et Communauté
Manager & Scientific Kremer ANTOINE antoine.kremer_inrae.fr BIOGECO - Biodiversité Gènes et Communauté