Study Phenotyping Study: Clonal test of mapping pedigree 3P_A4

Identification

Name
Clonal test of mapping pedigree 3P_A4
Identifier
dXJuOklOUkFFLVVSR0kvc3R1ZHkvQm91cnJhbjFfM1BfQTQ=
Source
URGI GnpIS logo
Data link
Link to this study on URGI GnpIS
Project name
GEN4X
Seasons
1970,2000,2001,2003,2004,2005,2006,2007,2012,2013,2014,2015
Location name
Bourran1
Data files

Genotype

Accession number Name Taxon
Q100 Q100 Quercus robur
Q101 Q101 Quercus robur
Q105 Q105 Quercus robur
Q106 Q106 Quercus robur
Q107 Q107 Quercus robur
Q108 Q108 Quercus robur
Q109 Q109 Quercus robur
Q115 Q115 Quercus robur
Q116 Q116 Quercus robur
Q117 Q117 Quercus robur
Q118 Q118 Quercus robur
Q119 Q119 Quercus robur
Q120 Q120 Quercus robur
Q122 Q122 Quercus robur
Q123 Q123 Quercus robur
Q124 Q124 Quercus robur
Q125 Q125 Quercus robur
Q126 Q126 Quercus robur
Q127 Q127 Quercus robur
Q129 Q129 Quercus robur
Q130 Q130 Quercus robur
Q132 Q132 Quercus robur
Q133 Q133 Quercus robur
Q134 Q134 Quercus robur
Q136 Q136 Quercus robur
Q138 Q138 Quercus robur
Q140 Q140 Quercus robur
Q141 Q141 Quercus robur
Q151 Q151 Quercus robur
Q152 Q152 Quercus robur
Q154 Q154 Quercus robur
Q157 Q157 Quercus robur
Q158 Q158 Quercus robur
Q159 Q159 Quercus robur
Q161 Q161 Quercus robur
Q163 Q163 Quercus robur
Q164 Q164 Quercus robur
Q165 Q165 Quercus robur
Q166 Q166 Quercus robur
Q167 Q167 Quercus robur
Q169 Q169 Quercus robur
Q170 Q170 Quercus robur
Q171 Q171 Quercus robur
Q172 Q172 Quercus robur
Q173 Q173 Quercus robur
Q174 Q174 Quercus robur
Q175 Q175 Quercus robur
Q176 Q176 Quercus robur
Q177 Q177 Quercus robur
Q178 Q178 Quercus robur
Q179 Q179 Quercus robur
Q180 Q180 Quercus robur
Q181 Q181 Quercus robur
Q184 Q184 Quercus robur
Q185 Q185 Quercus robur
Q186 Q186 Quercus robur
Q187 Q187 Quercus robur
Q188 Q188 Quercus robur
Q189 Q189 Quercus robur
Q190 Q190 Quercus robur
Q192 Q192 Quercus robur
Q196 Q196 Quercus robur
Q200 Q200 Quercus robur
Q201 Q201 Quercus robur
Q204 Q204 Quercus robur
Q208 Q208 Quercus robur
Q209 Q209 Quercus robur
Q210 Q210 Quercus robur
Q211 Q211 Quercus robur
Q212 Q212 Quercus robur
Q213 Q213 Quercus robur
Q214 Q214 Quercus robur
Q215 Q215 Quercus robur
Q216 Q216 Quercus robur
Q217 Q217 Quercus robur
Q218 Q218 Quercus robur
Q219 Q219 Quercus robur
Q220 Q220 Quercus robur
Q221 Q221 Quercus robur
Q223 Q223 Quercus robur
Q228 Q228 Quercus robur
Q229 Q229 Quercus robur
Q231 Q231 Quercus robur
Q232 Q232 Quercus robur
Q233 Q233 Quercus robur
Q234 Q234 Quercus robur
Q235 Q235 Quercus robur
Q236 Q236 Quercus robur
Q237 Q237 Quercus robur
Q238 Q238 Quercus robur
Q239 Q239 Quercus robur
Q240 Q240 Quercus robur
Q242 Q242 Quercus robur
Q243 Q243 Quercus robur
Q246 Q246 Quercus robur
Q247 Q247 Quercus robur
Q248 Q248 Quercus robur
Q249 Q249 Quercus robur
Q254 Q254 Quercus robur
Q257 Q257 Quercus robur

Variables

Variable ID Variable short name Variable long name Ontology name Trait description
CO_357:0000010 BF_score_BL Broadleaves budflush scoring Woody Plant Ontology Assessment of bud break
CO_357:0000018 CB Basal sweep Woody Plant Ontology Assessment of the basal curve
CO_357:0000019 CIR Tree circumference Woody Plant Ontology Circumference of the tree main stem
CO_357:0000048 HT Tree total height Woody Plant Ontology Total height of the tree, from the ground to the tallest part of the crown
CO_357:0000076 SEN Senescence Woody Plant Ontology Assessment of the senescence, the growth phase in a plant or plant part (such as a leaf) from full maturity to death
CO_357:0000085 Delta13C Leaf carbone isotope discrimination Woody Plant Ontology Carbon isotope (C13) composition in leaves
CO_357:0000086 CM Leaf carbon content Woody Plant Ontology Carbon content in leaves
CO_357:0000087 LNC Leaf nitrogen content Woody Plant Ontology Nitrogen content in leaves
CO_357:0000230 Amax Maximum assimilation rate Woody Plant Ontology Assimilation rate
CO_357:0000231 Amean Mean assimilation rate Woody Plant Ontology Assimilation rate
CO_357:0000242 gwmax Maximum stomatal conductance Woody Plant Ontology Stomatal conductance, the rate of passage of water vapor exiting through the stomata of a leaf
CO_357:0000243 gwmean Mean stomatal conductance Woody Plant Ontology Stomatal conductance, the rate of passage of water vapor exiting through the stomata of a leaf
CO_357:0000246 HRf Pubescence in lamina central part Woody Plant Ontology Assessment of the lamina pubescence, the fact of having fine hairs more or less spaced on the leaf blade
CO_357:0000247 HRn Pubescence along the veins Woody Plant Ontology Assessment of the lamina pubescence, the fact of having fine hairs more or less spaced on the leaf blade
CO_357:0000249 LCCa Leaf chlorophyll content per leaf area Woody Plant Ontology Chlorophyll content in leaves
CO_357:0000252 WP Lamina largest width Woody Plant Ontology Largest width of the lamina
CO_357:0000253 LL Lamina length Woody Plant Ontology Lamina length
CO_357:0000254 OB Obversity Woody Plant Ontology Shape of the lamina
CO_357:0000255 LMA Leaf mass per leaf area Woody Plant Ontology Leaf mass per leaf area
CO_357:0000258 LS Leaf surface Woody Plant Ontology Leaf surface
CO_357:0000259 LW Lobe width Woody Plant Ontology Lobe width
CO_357:0000260 SW Sinus width Woody Plant Ontology Width of the leaf sinus, the space or indentation between two lobes or teeth of a leaf
CO_357:0000261 LWR Lobe width ratio Woody Plant Ontology Lobe width ratio
CO_357:0000262 LDR Lobe depth ratio Woody Plant Ontology Lobe depth ratio
CO_357:0000263 NL Number of lobes Woody Plant Ontology Assessment of the quantity of lobes on the lamina
CO_357:0000267 NV Number of intercalary veins Woody Plant Ontology Assessment of the quantity of leaf intercalary veins
CO_357:0000268 PL Petiole length Woody Plant Ontology Petiole length
CO_357:0000269 PR Petiole ratio Woody Plant Ontology Petiole ratio
CO_357:0000270 PV Percentage venation Woody Plant Ontology Percentage venation
CO_357:0000287 LN/LC Ratio leaf nitrogen to leaf carbon Woody Plant Ontology Ratio leaf nitrogen to leaf carbon
CO_357:0000288 MaxWi Maximum water use efficiency Woody Plant Ontology Water use efficiency, the ratio of water used in plant metabolism to water lost by the plant through transpiration
CO_357:0000289 MWi Mean intrinsic water use efficiency Woody Plant Ontology Water use efficiency, the ratio of water used in plant metabolism to water lost by the plant through transpiration

Data Set

Name Type Linked studies identifier
Biogeco Network Outbred pedigree G2 from a controlled cross of two intra-provenance (Landes x Landes) hybrid trees / G2_9.106.3 x 10.159.3 Inbred pedigree classical F2 population resulting from the selfing of a single inter-provenance (Landes x Corsica) hybrid tree / F2_H12 x H12 Clonal test of mapping pedigree 3P_A4 Clonal test of mapping pedigree Qs28_Qs21 Clonal test of mapping pedigree 3P_A4 Clonal test of mapping pedigree 27P_Qs28 Clonal test of mapping pedigree 11P_Qs29 Clonal test of mapping pedigree 11P_Qs28 Clonal test of mapping pedigree 11P_11P Clonal test of mapping pedigree 3P_A4 Clonal test of mapping pedigree 3P_A4;

Contact

Role Name Email Institution
Manager Kremer ANTOINE antoine.kremer_inrae.fr BIOGECO - Biodiversité Gènes et Communauté
Manager & Scientific Kremer ANTOINE antoine.kremer_inrae.fr BIOGECO - Biodiversité Gènes et Communauté