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Populus trichocarpa

The release 1.1 of Populus trichocarpa genome is estimated to be approximately 474 million base pairs contained in 19 chromosomes, and is being sequenced to approximately 7.5X depth.

  • Genes models: 45,555 gene models
  • Scaffolds: 22,136 scaffolds totaling 473.1 Mbp
  • Exon: 221, 897 exons

This annotation contains:

  • Gene Predictions
  • QTLs
  • Markers SSR
  • Polypeptides

Access to Genome Browser

 

The Populus trichocarpa genome in private server contains additional QTLs and Markers SSR.

Access to Private Genome Browser

 

The JGI v2.0 annotation of assembly v2 is released since january 8, 2010.

  • Genome : approximately 403Mb arranged in 19 chromosomes, assembled into 2518 scaffolds
  • Loci: 41377 loci containing protein-coding transcripts
  • Transcripts: 45778 protein-coding transcripts

Access to Genome Browser

Update: 28 Mar 2012
Creation date: 28 Apr 2010