CONTACT  |  SITE MAP  |  ABOUT US   
Ask an account

Data

You are here : Home / Home URGI / Data / Transposable elements / Aphid

Acyrthosiphon pisum

2022

We have annotated transposable element from Acyrthosiphon pisum (clone LSR1, Pea aphid, publication The International Aphid Genomics Consortium, 2010,  Raw data coverage for assembly 39X, Genome Size 541 Mb)


The result are available through repetdb by following this link https://urgi.versailles.inrae.fr/repetdb/begin.do#search?taxonGroup=7029 and genome available here https://bipaa.genouest.org/is/aphidbase/

----------------------------------------------------------------------------------------------------------------------------------------------------------------------

2010

We annotated transposable elements in Acyrthosiphon pisum (pea aphid) in the frame of the International Aphid Genomic Consortium (IAGC).

The results are published in the genome paper on the first assembly release (PLoS Biology, 2010).

  •  TE reference sequences have been obtained with the TEdenovo pipeline from the REPET package and curated by the "transposable element annotation group":

Hadi Quesneville (Chair, URGI France), Emmanuelle Permal (URGI France), Andrés Moya (Universitat de València, València, Spain), Carlos Llorens (Universitat de València, València, Spain), Ricardo Futami (Universitat de València, València, Spain), Alex C. C. Wilson (University of Miami, Florida, United States of America), Dale Hedges (Miami Institute for Human Genomics, Florida, United States of America).

 

acyr_refTEs.zip 3.33 MB

 

 

  • TE genome annotations (GFF3) have been obtained with the TEannot pipeline from the REPET package

 

 

 

Other genome data can be accessed on AphidBase web site.

Update: 05 Sep 2024
Creation date: 30 Jun 2010