Data Services

GnpIS is an integrative and multi-species information system dedicated to plants, including forest trees. It handles various types of data, focusing on genetic resources and phenomics. It allows researchers from the Plant community to access and cross-reference genetic data (accessions, phenotypes, polymorphisms, markers and QTLs) and genomic data (sequences, physical maps, genome annotations) for species of agronomic and forestry interest.

Accessible via a web portal, GnpIS enables different types of data to be browsed, either independently via dedicated interfaces, or simultaneously using search tools.

GnpIS adds value its datasets by enabling their interoperability and reusability through the use of internationally agreed standards and ontologies. It is continuously improving its compliance with the FAIR principles (Findable, Accessible, Interoperable, Reusable). To enhance the findability and accessibility of the submitted datasets, we collaborate with Data INRAE to assign a DOI (Digital Object Identifier) to your dataset and integrate it into GnpIS.

GnpIS is used by INRAE and its partners in major national and international projects.

For more information, see the dedicated page (TODO).

DATA OVERVIEW ?

GnpIS data can be accessed here : https://urgi.versailles.inrae.fr/gnpis .

To submit new datasets, please refer to the  relevant guidelines .

References

GnpIS

• Adam-Blondon et al. Mining Plant Genomic and Genetic Data Using the GnpIS Information System. Methods Mol Biol. 2017;1533:103-117. https://doi.org/10.1007/978-1-4939-6658-5_5
• Steinbach et al. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database (Oxford). 2013;2013:bat058. Published 2013 Aug 19. https://doi.org/10.1093/database/bat058

Focus on wheat data

Alaux et al. Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biol. 2018;19(1):111. Published 2018 Aug 17. https://doi.org/10.1186/s13059-018-1491-4

Focus on phenotyping data  

Pommier et al. Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS, Plant Phenomics, vol. 2019, Article ID 1671403, 15 pages, 2019. https://doi.org/10.34133/2019/1671403

Funding ?