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Tedna

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  • Version: 1.3
  • Access: free acces url 

Tedna


Tedna is a lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.

Last version: 1.3

  • Source code in github
  • Changes: Long reads as input are available.

Previous versions

  • Version 1.2.2
    • Source code: tedna_1.2.2.tar.gz (264.93 kB)
    • Binary: tedna (407.88 kB)
    • Changes:
      • Removed autotools. It never like me.
      • Added a "version" parameter in command line.
  • Version 1.2.1
    • Source code:  tedna_1.2.1.tar.gz (154.06 kB)
    • Binary:  tedna (411.84 kB)
    • Changes:
      • Increased default max TE size to 30kb instead of 3kb.
      • Corrected bug when using the "--check" option.

 

Documentation: tedna_doc.pdf (181.43 kB)

Supplementary material for the paper
The dataset, together with the copia element, can be downloaded here: copia.tar.bz2 (5.52 MB)


Access mode(s):

Downloadable

Update: 19 Dec 2018
Creation date: 30 Oct 2013