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2016

21 Nov 2016 Training on annotation of transposable elements

Detection and annotation of transposable elements in eukaryote genome

The objectives of this training are:
1. To acquire knowledge on transposable elements
2. To achieve annotation of transposable elements in the genome using the pipeline REPET
3. To be autonomous on your own data.

Location: URGI, INRA Versailles

Dates 

November 21-22nd, 2016: module 1
November 23rd, 2016: module 2 (optional)
November 24th, 2016: you are welcomed to stay at URGI to work on your own data (on demand)

Module 1: REPET-Lite

  • Opening presentation on transposable elements
  • The REPET pipelines and strategies of repeat annotation
  • Galaxy overview and practices
  • Launch REPET-lite on Galaxy

Module 2: Manual curation of transposable elements

  • Strategy for manual curation
  • Tools for data visualization and analyses
  • Practice using training dataset 

This training is dedicated to biologists and/or bioinformaticians (10 pers. max)

Registration and information by mail to: 

nathalie.choisne_at_versailles.inra.fr AND olivier.inizan_at_versailles.inra.fr

Update: 29 Jun 2016
Creation date: 24 Jun 2016