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Annotation service

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Tools

Annotation service tools


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Full List(4)

REPET
The REPET package integrates bioinformatics programs in order to tackle biological issues at the genomic scale. It is distributed underand deposited to the Agence de Protection des Programmes (APP) under the Inter Deposit Digital Number FR 001 480007 000 R P 2008 ...

PASTEClassifier
The PASTEClassifier (Pseudo Agent System for Transposable Elements Classification) is a transposable element (TE) classifier searching for structural features and similarity to classify TEs (Hoede C. et al. 2014). It browses the whole spectrum of ...

free acces url

Tedna
Tedna is a lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.Last version: 1.3
  • Source code in github
  • Changes: Long reads as input are available.
Previous versions
  • Version 1.2.2
    • Source code: ...

free acces url

BLAST
BLAST+ NCBI 2.2.29
  • Public BLAST using ViroBLAST interface.
...




Creation date: 29 Jul 2024