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SL2.40ch00
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch01
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch02
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch03
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch04
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch05
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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SL2.40ch08
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch09
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch10
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch11
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
SL2.40ch12

Name Type Description Position Match Score
RF00005 transcript SL2.40ch00:11807065..11807137 72.48
RF00005 transcript SL2.40ch01:3274222..3274293 72.46
RF00005 transcript SL2.40ch02:22195262..22195333 72.46
RF00005 transcript SL2.40ch02:33660038..33660109 72.46
RF00005 transcript SL2.40ch04:62097265..62097336 72.46
RF00005 transcript SL2.40ch05:63050729..63050800 72.46
RF00005 transcript SL2.40ch06:375529..375600 72.46
RF00005 transcript SL2.40ch06:395627..395698 72.46
RF00005 transcript SL2.40ch06:41937719..41937790 72.46
RF00005 transcript SL2.40ch09:64187637..64187708 72.46
RF00005 transcript SL2.40ch10:51111938..51112009 72.46
RF00005 transcript SL2.40ch10:51131901..51131972 72.46
RF00005 transcript SL2.40ch12:42553204..42553275 72.46
RF00005 transcript SL2.40ch12:42565765..42565836 72.46
RF00005 transcript SL2.40ch12:62668699..62668770 72.46
RF00005 transcript SL2.40ch04:3877681..3877753 72.14
RF00005 transcript SL2.40ch01:74384766..74384837 71.04
RF00005 transcript SL2.40ch08:58862257..58862328 71.04
RF00005 transcript SL2.40ch03:14355156..14355227 70.03
RF00005 transcript SL2.40ch06:41545340..41545411 69.98
RF00005 transcript SL2.40ch10:2624480..2624551 69.55
RF00005 transcript SL2.40ch05:61303947..61304020 68.92
RF00005 transcript SL2.40ch12:2611293..2611366 68.92
RF00005 transcript SL2.40ch12:4939710..4939783 68.92
RF00005 transcript SL2.40ch08:207177..207250 68.9
RF00005 transcript SL2.40ch08:57468295..57468368 68.9
RF00005 transcript SL2.40ch11:8295316..8295389 68.9
RF00005 transcript SL2.40ch02:39377073..39377144 68.81
RF00005 transcript SL2.40ch01:74374736..74374807 68.78
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RF00005 transcript SL2.40ch11:5988568..5988640 68.7
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RF00005 transcript SL2.40ch12:48431028..48431100 68.7
RF00005 transcript SL2.40ch04:57336575..57336647 68.69
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RF00005 transcript SL2.40ch01:82002324..82002397 68.58
RF00005 transcript SL2.40ch02:47956084..47956157 68.58
RF00005 transcript SL2.40ch07:60559703..60559776 68.58
RF00005 transcript SL2.40ch10:2183506..2183579 68.58
RF00005 transcript SL2.40ch12:3693907..3693980 68.58
RF00005 transcript SL2.40ch07:60191877..60191948 68.49
RF00005 transcript SL2.40ch08:54855797..54855868 68.49
RF00005 transcript SL2.40ch12:64895097..64895170 68.43
RF00005 transcript SL2.40ch11:52157050..52157121 68.39
RF00005 transcript SL2.40ch08:90807..90880 68.28
RF00005 transcript SL2.40ch08:57775870..57775943 68.28
RF00005 transcript SL2.40ch02:36835446..36835519 67.96
RF00005 transcript SL2.40ch04:4165488..4165561 67.96
RF00005 transcript SL2.40ch07:53488424..53488497 67.96
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RF00005 transcript SL2.40ch03:56473119..56473190 67.83
RF00005 transcript SL2.40ch06:40627206..40627277 67.83
RF00005 transcript SL2.40ch10:3147022..3147093 67.75
RF00005 transcript SL2.40ch06:38303163..38303236 67.68
RF00005 transcript SL2.40ch07:63159050..63159121 67.61
RF00005 transcript SL2.40ch02:45513041..45513112 67.44
RF00005 transcript SL2.40ch06:40430261..40430332 67.42
RF00005 transcript SL2.40ch07:62887886..62887958 67.24
RF00005 transcript SL2.40ch02:46988512..46988584 67.22
RF00005 transcript SL2.40ch07:58285396..58285467 67.22
RF00005 transcript SL2.40ch03:50203819..50203892 67.21
RF00005 transcript SL2.40ch02:45329197..45329270 67.17
RF00005 transcript SL2.40ch06:39596250..39596321 67.15
RF00005 transcript SL2.40ch02:34926992..34927063 67.03
RF00005 transcript SL2.40ch03:62861440..62861511 67.03
RF00005 transcript SL2.40ch04:23709137..23709208 67.03
RF00005 transcript SL2.40ch05:7271999..7272070 67.03
RF00005 transcript SL2.40ch12:62797701..62797773 67.0
RF00005 transcript SL2.40ch03:196748..196819 66.97
RF00005 transcript SL2.40ch03:62064218..62064291 66.97
RF00005 transcript SL2.40ch01:87433427..87433500 66.93
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RF00005 transcript SL2.40ch06:39816572..39816645 66.93
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RF00005 transcript SL2.40ch09:4552597..4552670 66.93
RF00005 transcript SL2.40ch10:57969285..57969358 66.93
RF00005 transcript SL2.40ch10:58369713..58369786 66.93
RF00005 transcript SL2.40ch10:64728625..64728698 66.93
RF00005 transcript SL2.40ch00:17698523..17698594 66.91
RF00005 transcript SL2.40ch01:3903981..3904052 66.91
RF00005 transcript SL2.40ch01:89125498..89125569 66.91
RF00005 transcript SL2.40ch03:7456312..7456383 66.91
RF00005 transcript SL2.40ch03:50274771..50274842 66.91
RF00005 transcript SL2.40ch04:3850403..3850474 66.91
RF00005 transcript SL2.40ch05:63654374..63654445 66.91
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RF00005 transcript SL2.40ch06:35504984..35505055 66.91
RF00005 transcript SL2.40ch06:41864043..41864114 66.91
RF00005 transcript SL2.40ch06:41877215..41877286 66.91
RF00005 transcript SL2.40ch08:2792941..2793012 66.91
RF00005 transcript SL2.40ch10:62023869..62023940 66.91
RF00005 transcript SL2.40ch01:3482631..3482704 66.89
RF00005 transcript SL2.40ch01:86501800..86501873 66.89
RF00005 transcript SL2.40ch02:30703316..30703389 66.89
RF00005 transcript SL2.40ch02:31772409..31772482 66.89
RF00005 transcript SL2.40ch02:33618272..33618345 66.89
RF00005 transcript SL2.40ch02:47332136..47332209 66.89
RF00005 transcript SL2.40ch04:49663..49736 66.89
RF00005 transcript SL2.40ch05:1001031..1001104 66.89
RF00005 transcript SL2.40ch05:5456416..5456489 66.89
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RF00005 transcript SL2.40ch06:35286294..35286367 66.89
RF00005 transcript SL2.40ch06:35342431..35342504 66.89
RF00005 transcript SL2.40ch06:39273480..39273553 66.89
RF00005 transcript SL2.40ch11:2196320..2196393 66.89
RF00005 transcript SL2.40ch12:45712519..45712592 66.89
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RF00005 transcript SL2.40ch06:38199225..38199298 66.81
RF00005 transcript SL2.40ch00:19965436..19965507 66.71
RF00005 transcript SL2.40ch11:23163327..23163398 66.71
RF00005 transcript SL2.40ch04:56271563..56271636 66.55
RF00005 transcript SL2.40ch01:88292984..88293055 66.47
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RF00005 transcript SL2.40ch03:11613330..11613403 66.02
RF00005 transcript SL2.40ch03:58911315..58911386 65.94
RF00005 transcript SL2.40ch01:5279545..5279617 65.92
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RF00005 transcript SL2.40ch01:1844791..1844863 65.55
RF00005 transcript SL2.40ch01:1863651..1863724 65.3
RF00005 transcript SL2.40ch05:59876609..59876680 65.19
RF00005 transcript SL2.40ch00:17969205..17969277 64.98
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RF00005 transcript SL2.40ch11:13380228..13380299 45.13
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RF00005 transcript SL2.40ch05:30148379..30148452 44.9
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RF00005 transcript SL2.40ch02:38449318..38449391 43.65
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RF00005 transcript SL2.40ch01:7029360..7029430 43.39
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RF00005 transcript SL2.40ch03:50950734..50950799 38.03
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RF00005 transcript SL2.40ch10:702469..702542 37.84
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RF00005 transcript SL2.40ch02:9729252..9729332 37.61
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RF00005 transcript SL2.40ch04:26361157..26361227 37.05
RF00005 transcript SL2.40ch05:45251983..45252056 36.82
RF00005 transcript SL2.40ch06:42762173..42762267 36.66
RF00005 transcript SL2.40ch07:60049702..60049794 36.64
RF00005 transcript SL2.40ch07:3306801..3306873 36.58
RF00005 transcript SL2.40ch11:45768698..45768769 36.57
RF00005 transcript SL2.40ch12:5655353..5655426 36.34
RF00005 transcript SL2.40ch03:20989737..20989808 35.87
RF00005 transcript SL2.40ch07:14742692..14742763 35.83
RF00005 transcript SL2.40ch08:23704200..23704271 35.75
RF00005 transcript SL2.40ch04:56205230..56205321 35.6
RF00005 transcript SL2.40ch02:5022522..5022595 35.59
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RF00005 transcript SL2.40ch03:45546581..45546665 35.25
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RF00005 transcript SL2.40ch08:25556..25640 35.03
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- Tracks
- Association data (Avignon)
   
ASA Association analysis (Manhattan plot) CITRATE Association analysis (Manhattan plot) FRUCTOSE Avignon
ASA Avignon CITRATE Avignon FUCOSE Association analysis (Manhattan plot)
ASPARAGINE Association analysis (Manhattan plot) DHA Association analysis (Manhattan plot) FUCOSE Avignon
ASPARAGINE Avignon DHA Avignon GABA Association analysis (Manhattan plot)
ASPARTATE Association analysis (Manhattan plot) ERYTHRITOL Association analysis (Manhattan plot) GABA Avignon
ASPARTATE Avignon ERYTHRITOL Avignon MALATE Association analysis (Manhattan plot)
BRIX Association analysis (Manhattan plot) FRUCTOSE Association analysis (Manhattan plot) MALATE Avignon
- BACs
   
BAC BAC clone BAC Ends
- BRIX Avignon
   
SNP_BRIX_Avignon   
- De novo Genes finders
   
Genes (Augustus, GeneID) Transcripts (Augustus, GeneID, GlimmerHmm )  
Transcriptions site (start, end) tRNA trnascane  
- General
   
transcripts_tomato   
- Genes Models
   
Genes Eugene mRNA Eugene UTR Eugene
Introns Eugene Polypeptide Eugene  
- Infernal data
   
Transcript Infernal   
- Proteins Functional
   
Proteins (blastp ...)   
- REPET analysis
   
Repeat annotation   
- SGN data
   
SGN Loci SGN Markers SGN Unigenes
- CDNA Alignments data
   
Microtom flcdnas Transcripts sol Transcripts tomato
- Overview
   
Gene Eugene   
- Analysis
   
Restriction Sites   

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