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2013

07 Oct 2013 Galaxy workflows training @URGI

Two training sessions will be held at URGI in October 2013. They are organized in the frame of the URGI platform Plant and Fungi call of proposal

 
 

Session 1: October 2013, 14-15 (registration closed)

Session 2: October 2013, 28-29 (registration closed)

Location: INRA Versailles, Bat 18, Route de Saint-Cyr, 78000 Versailles

N. Lapalu, F. Alfama-Depauw, O. Inizan, N. Mohellibi, J. Kreplak and J. Amselem

 

These training sessions will instruct participants in the use of Galaxy workflows developed at URGI.  All the participants will practice in parallel with the trainer using the same use cases datasets.

 

1st day  PM: 01:00 – 05:30 

Galaxy initiation

  • Galaxy overview
  • Data management
  • Data quality
  • Mapping
  • Workflow designing
  • Visualization tools

2nd day AM: 9:00-12:00

SNP calling, MAPHiTS (Mapping Analysis Pipeline for High-Throughput Sequences)

  • SNP calling: principles
  • MAPHiTS workflow
  • Post-processing tools
  • Visualization tools
  • Feedback, discussion

12:00 – 13:00 Lunch at INRA-Versailles self-service

2nd day PM: 13:15-16:00

Differential Expression Analysis (DEA)

  • Principles
  • DEA workflow
  • Visualization tools
  • Feedback, discussion

Update: 14 Oct 2013
Creation date: 07 Oct 2013