Protein : Qrob_P0016970.2 Q. robur
Protein Identifier  ? Qrob_P0016970.2 Organism . Name  Quercus robur
Score  93.3 Score Type  egn
Protein Description  (M=1) PTHR11125:SF8 - KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 (PTHR11125:SF8) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1542  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256388 5 1220 + 1216 Gaps:140 46.27 2667 57.13 0.0 uncharacterized LOC100256388
blastp_kegg lcl|tcc:TCM_043328 1 1272 + 1272 Gaps:247 81.14 1596 54.44 0.0 Kow domain-containing transcription factor 1 putative
blastp_kegg lcl|rcu:RCOM_1010880 5 908 + 904 Gaps:75 55.66 1547 60.86 0.0 suppressor of ty putative
blastp_kegg lcl|cit:102627386 5 908 + 904 Gaps:106 50.20 1741 62.36 0.0 uncharacterized LOC102627386
blastp_kegg lcl|cic:CICLE_v10030480mg 5 908 + 904 Gaps:106 48.37 1807 62.36 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000178mg 1 1252 + 1252 Gaps:208 75.59 1516 53.75 0.0 hypothetical protein
blastp_kegg lcl|fve:101311630 5 691 + 687 Gaps:35 95.11 696 64.95 0.0 transcription elongation factor SPT5-like
blastp_kegg lcl|pvu:PHAVU_007G024600g 8 735 + 728 Gaps:48 56.19 1228 63.19 0.0 hypothetical protein
blastp_kegg lcl|gmx:100787703 15 619 + 605 Gaps:14 41.80 1457 65.35 0.0 uncharacterized LOC100787703
blastp_kegg lcl|ath:AT5G04290 22 910 + 889 Gaps:106 63.56 1493 48.58 0.0 KTF1 kow domain-containing transcription factor 1
blastp_pdb 3h7h_B 76 165 + 90 Gaps:4 86.79 106 39.13 8e-12 mol:protein length:106 Transcription elongation factor SPT5
blastp_pdb 2exu_A 81 169 + 89 Gaps:2 45.50 200 38.46 3e-08 mol:protein length:200 Transcription initiation protein SPT4/SPT5
blastp_uniprot_sprot sp|O80770|SPT52_ARATH 28 591 + 564 Gaps:57 57.03 989 37.06 9e-63 Putative transcription elongation factor SPT5 homolog 2 OS Arabidopsis thaliana GN At2g34210 PE 3 SV 2
blastp_uniprot_sprot sp|Q9STN3|SPT51_ARATH 28 617 + 590 Gaps:43 58.79 1041 36.60 2e-61 Putative transcription elongation factor SPT5 homolog 1 OS Arabidopsis thaliana GN At4g08350 PE 1 SV 2
blastp_uniprot_sprot sp|O13936|SPT5_SCHPO 31 621 + 591 Gaps:51 54.04 990 31.96 6e-37 Transcription elongation factor spt5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN spt5 PE 1 SV 1
blastp_uniprot_sprot sp|Q4PIC4|SPT5_USTMA 5 480 + 476 Gaps:37 42.19 1057 32.29 2e-32 Transcription elongation factor SPT5 OS Ustilago maydis (strain 521 / FGSC 9021) GN SPT5 PE 3 SV 1
blastp_uniprot_sprot sp|Q21338|SPT5H_CAEEL 31 311 + 281 Gaps:17 22.85 1208 33.70 7e-32 Transcription elongation factor SPT5 OS Caenorhabditis elegans GN spt-5 PE 3 SV 3
blastp_uniprot_sprot sp|Q6FRZ5|SPT5_CANGA 31 448 + 418 Gaps:63 38.12 1010 30.91 2e-30 Transcription elongation factor SPT5 OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN SPT5 PE 3 SV 1
blastp_uniprot_sprot sp|Q6CC84|SPT5_YARLI 68 457 + 390 Gaps:112 47.96 980 27.45 6e-28 Transcription elongation factor SPT5 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN SPT5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9DDT5|SPT5H_DANRE 68 617 + 550 Gaps:81 49.54 1084 29.98 5e-27 Transcription elongation factor SPT5 OS Danio rerio GN supt5h PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZI08|SPT5H_CHICK 68 617 + 550 Gaps:71 49.40 1079 31.33 8e-27 Transcription elongation factor SPT5 OS Gallus gallus GN SUPT5H PE 2 SV 1
blastp_uniprot_sprot sp|Q4WP96|SPT5_ASPFU 32 312 + 281 Gaps:44 26.75 1058 31.80 9e-27 Transcription elongation factor spt5 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN spt5 PE 3 SV 1
rpsblast_cdd gnl|CDD|193577 82 166 + 85 none 98.84 86 43.53 1e-29 cd09888 NGN_Euk Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain including plant KTF1 (KOW domain-containing Transcription Factor 1). The N-Utilization Substance G (NusG) protein and its eukaryotic homolog Spt5 are involved in transcription elongation and termination. NusG contains an NGN domain at its N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at its C-terminus. Spt5 forms an Spt4-Spt5 complex that is an essential RNA polymerase II elongation factor. NusG was originally discovered as an N-dependent antitermination enhancing activity in Escherichia coli and has a variety of functions such as its involvement in RNA polymerase elongation and Rho-termination in bacteria. Orthologs of the NusG gene exist in all bacteria but their functions and requirements are different. Spt5-like is homologous to the Spt5 proteins present in all eukaryotes which is unique as it encodes a protein with an additional long carboxy-terminal extension that contains WG/GW motifs. Spt5-like or KTF1 (KOW domain-containing Transcription Factor 1) is a RNA-directed DNA methylation (RdDM) pathway effector in plants.
rpsblast_cdd gnl|CDD|202630 82 165 + 84 Gaps:1 98.81 84 42.17 1e-22 pfam03439 Spt5-NGN Early transcription elongation factor of RNA pol II NGN section. Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit.
rpsblast_cdd gnl|CDD|185479 1242 1347 + 106 Gaps:9 19.45 293 91.23 1e-10 PTZ00146 PTZ00146 fibrillarin Provisional.
rpsblast_cdd gnl|CDD|181467 82 209 + 128 Gaps:5 80.39 153 28.46 4e-10 PRK08559 nusG transcription antitermination protein NusG Validated.
rpsblast_cdd gnl|CDD|129499 85 209 + 125 Gaps:5 82.76 145 24.17 4e-09 TIGR00405 L26e_arch ribosomal protein L24p/L26e archaeal. This protein contains a KOW domain shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications it is the only close homolog of eukaryotic L26e in archaeal genomes shares an operon with L11 in many genomes and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
rpsblast_cdd gnl|CDD|34765 330 752 + 423 Gaps:50 64.74 607 20.87 4e-07 COG5164 SPT5 Transcription elongation factor [Transcription].
rpsblast_kog gnl|CDD|37210 6 931 + 926 Gaps:224 88.57 1024 37.16 9e-85 KOG1999 KOG1999 KOG1999 RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription].
rpsblast_kog gnl|CDD|36139 1183 1349 + 167 Gaps:42 9.59 1282 59.35 1e-12 KOG0921 KOG0921 KOG0921 Dosage compensation complex subunit MLE [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 79 168 90 SM00738 none In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. IPR006645
PANTHER 7 616 610 PTHR11125:SF8 none none none
Pfam 82 165 84 PF03439 none Early transcription elongation factor of RNA pol II, NGN section IPR005100
SMART 173 200 28 SM00739 none KOW (Kyprides, Ouzounis, Woese) motif. IPR005824
SMART 410 437 28 SM00739 none KOW (Kyprides, Ouzounis, Woese) motif. IPR005824
SMART 520 547 28 SM00739 none KOW (Kyprides, Ouzounis, Woese) motif. IPR005824
PANTHER 7 616 610 PTHR11125 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting