CONTACT  |  SITE MAP  |  ABOUT US   
Ask an account

About us

You are here : Home / Home URGI / About us / News / 2012 / GBrowse-Mobyle link

2012

08 Oct 2012 Tools: link from Blast Results to Gbrowse

We provide a new link between Blast results launched via the Mobyle framework ( blast via mobyle ) and our genome browser ( GBrowse ).

For each Blast hit, gbrowse logo is displayed:

gbrowse_link_mobyle

 

If you click on it, your result will be automatically loaded in gbrowse and will be displayed as a new track named "Your Mobyle BLAST Hits".

gbrowse_link_mobyle2

Warning: if the region covered by the hit is too large, you will have to refine the selected region in the Gbrowse "search" area.

This new functionnality is currently available for 25 databanks:

proteins:

  • Botrytis T4 ORFs protein
  • Botrytis B05.10 ORFs
  • proteinLeptosphaeria maculans proteins
  • Sclerotinia ORFs protein
  • Zea mays 5a Peptide sequences of the Working Gene Set. from maizesequence.org (march 2011)        

nucleotides:

  • Arabidopsis thaliana TAIR v9 all chromosomes
  • Botrytis T4 genome supercontigs
  • Leptosphaeria maculans assembly
  • Leptosphaeria maculans Genes (CDS)
  • Vitis vinifera 8X PN40024 Chromosomes from The French-Italian Public Consortium
  • Vitis vinifera 12X PN40024 Chromosomes from The French-Italian Public ConsortiumZea mays refGen V2 chromosomes
  • Zea mays refGen V2 from maizesequence.org (march 2011) (one databank per chromosome)


Creation date: 09 Oct 2012