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Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


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TE_finder
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The TE_finder suite gathers C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. But we think that the tools are generic enough to be used in other contexts.The suite is mainly composed by four programs BLASTER, MATCHER, GROUPER, ...

free access url

Tedna
Tedna is a lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.Last version: 1.3
  • Source code in github
  • Changes: Long reads as input are available.
Previous versions
  • Version 1.2.2
    • Source code: ...

Update: 02 Dec 2011
Creation date: 31 May 2011