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Tools

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Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


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PASTEClassifier
The PASTEClassifier (Pseudo Agent System for Transposable Elements Classification) is a transposable element (TE) classifier searching for structural features and similarity to classify TEs (Hoede C. et al. 2014). It browses the whole spectrum of ...

PlantSyntenyViewer
Synteny is gene's order conservation between differents species.Developed by URGI team for J. Salse (INRA Clermont-Ferrand).Publications:
  •  Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes.
Pont, Caroline; Murat, Florent; Guizard, Sebastien; Flores, Raphael; Foucrier, ...

free access url

Predotar
Prediction: distinguish between mitochondrial and plastid targeting sequences
...

free access url

panREPET
no picture available
panREPET is described in this preprint available on BioRxiv
Project information
panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair ...

Update: 02 Dec 2011
Creation date: 31 May 2011



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