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Tools

Tools are in free access Public access or restricted access Registered access

They run on the web, unix or both.

Tools in restricted access can use unpublished data.


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CMAP
CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. The package also includes tools for curating map data.
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Censor
Compares and masks protein or nucleotide sequences.
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Cerelia
Maize cell wall catalog
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Chlorop
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Predict presence of chloroplast transit peptides
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Circos
Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions.Circos is ideal for creating publication-quality infographics and illustrations with a high data-to-ink ratio, richly layered ...

Cndsrc
Colin Dewey's software: RSEM, Mercator, FSA, parametric, etc
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Consed
Sequence contig, consensus, chromatogram editor (ace format)
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ContiGO
Gene ontology interface
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Crossmatch
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Sequence comparison
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Cufflinks
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many ...

cutadapt
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Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.Cleaning your data in this way is often required: Reads from small-RNA sequencing contain the 3’ sequencing adapter because the read is longer than the ...

Update: 02 Dec 2011
Creation date: 31 May 2011
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