Result page documentation
- Loci results
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Display all the loci obtained with a query and all the associated informations.
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Result table header
- Map name : The name of the map where the locus is assigned.
- Locus name : The locus name.
- Marker name : The marker name.
- Protocol : The mapping protocol type.
- Marker type : The marker type.
- Goal : The marker goal.
- Sequence name : The sequence name.
- Gene function (manual annotation) : The manual annotation of the sequence.
- Sequence / Contig annotation : Link to the sequence / Link to the last annotation obtained with a BLAST.
- Reliability / (source map name) : The mapping method type / the source map name if the Locus is projected.
- Linkage group : The linkage group name where the locus is assigned.
- Bin : The bin where the locus is assigned.
- Distance : The absolute distance of the locus on the linkage group. If available, in parenthesis the Actual centiMorgan Distances (ACD) computed as described in : http://moulon.inrae.fr/~bioinfo/mbw/irilmap1.html
- Proximal boundary locus : Proximal boundary locus of the confidence interval (LOD < -3 for the Maize).
- Distal boundary locus : Distal boundary locus of the confidence interval (LOD < -3 for the Maize).
- Dist. % : The loci position in percent inside the confidence interval.
- Intervals : The sub-interval number of the confidence interval.
- Proximal locus : Closest proximal framework locus flanking the estimated position of the gene.
- LOD : The LOD Score of the selected sub_interval.
- Distal locus : Closest distal framework locus flanking the estimated position of the gene.
- Link to QTL : Link to search the QTL that 's contain the absolute distance of the loci in their confidence interval.
- Link to QTL large : Link to search the QTL that 's include or overlap the loci confidence interval.
- Export current page to Excel : To create a file with tabs as separator.
- Graphical display : To allow graphical representation with all the QTL that colocalize in the applet viewer.
- Select QTL : To allow a sub-selection with criteria of the QTL that 's colocalize with the Loci.
- QTL results
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Display all the QTL obtained with a query and all the associated informations.
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Result table header
- QTL name : The name of the QTL.
- Theme : The theme name.
- Trait : The trait name.
- Trait description : The trait description.
- Map name : The map name where the QTL is assigned.
- Linkage group : The linkage group where the qtl is assigned.
- LOD : The LOD score of the QTL assignment.
- R2 : The R2 of the QTL assignment.
- Distance : The absolute distance of the QTL.
- From : The begin of the confidence interval.
- to : The end of the confidence interval.
- Reliability / (source map name) : The mapping method type (unprojected-projected) / the source map name if the QTL is projected.
- Link to loci : Link to search the Loci that their absolute distance is inside the QTL confidence interval.
- Link to loci large : Link to search the Loci that their confidence interval is inside or overlap the QTL confidence interval.
- Export current page to Excel : To create a file with tabs as separator.
- Graphical display : To allow graphical representation with all the QTL that colocalise in the applet viewer.
- Select QTL : To allow a sub-selection with criteria of the QTL that 's colocalise with the Loci.
- MetaQTLs
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Display all the MetaQTL obtained with a query and all the associated informations.
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Result table header
- MetaQTL : The name of the MetaQTL.
- Meta-analyse : The meta-analysis name.
- Meta-trait : The meta-trait name.
- Trait(s) : Trait beloging to the meta-trait.
- Map : The map name where the MetaQTL is assigned.
- Linkage group : The linkage group where the MetaQTL is assigned.
- From : The begin of the confidence interval.
- To : The end of the confidence interval.
- Position : The position of the MetaQTL.
- BioMercator XML export : To export BioMercator XML file.
- Marker results
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Display all the markers obtained with a query and all the associated informations.
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Result table header:
- Taxon : the taxon associated with the current marker.
- Marker name : the marker name.
- Marker type : the mapping protocol type used.
- Marker origin : the marker type.
- Goal : the marker goal.
- Gene function (manual annotation) : the manual annotation of the sequence.
- Link to loci : if any, the link towards the loci obtained with the current marker.
- Anchored clones : if any, display the list of the anchored clones and forward to the clone card.
- Export current page to Excel : to export results as a tabbed file.
- pool results
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Display all the pools obtained with a query and all the associated informations.
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Result table header:
- Marker name: the marker name.
- Pool project: if any, the associated pool project.
- Anchoring project: if any, the associated anchoring project.
- Pool set: if any, the associated pool set.
- Superpool: the number of the superpool which contains the current marker.
- Plates: if any, the list of all the plates where this marker has anchored.
- Rows: if any, the list of all the rows where this marker has anchored.
- Columns: if any, the list of all the columns where this marker has anchored.
- Mixes: if any, the list of all the mixes where this marker has anchored.
- Export current page to Excel : to export results as a tabbed file.
- Crosslink results
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Display all the crosslinks obtained with a query and all the associated informations.
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Result table header:
- Db name: the name of the database where the xref point on.
- Reference name: the name of the crosslink.
- Reference value: the value of the crosslink, which is a direct link (if the URL is stored in Genetic maps) toward external resources.
- Type: the reference type.
- Name: the name of the reference, which is a link toward the appropriate card (inside Genetic maps).
- Evidence: if any, the evidence of the reference.
- Contact: if any, the contact associated with the reference.
- Map results
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Display all the Maps for the query.
- Trait results
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Display all the Traits for the query.
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Result table header
- Trait name : The trait name.
- Trait description : The trait 's description.
- Genoplante classification : The genoplante classification.
- Theme : The theme.
- Keywords : The keywords associated to this trait.
- Export current page to Excel : To create a file with tabs as separator.
- Sequence results
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Display all the mapping sequences for a query.
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Result table header
- Sequence name : The sequence name.
- Sequence / Contig annotation : Link to the sequence / Link to the last annotation obtained with a BLAST.
- Link to marker : Link to the markers that obtained with this sequence.
- Export current page to Excel : To create a file with tabs as separator.