Result page documentation


  • Loci results
  • Display all the loci obtained with a query and all the associated informations.

      Result table header
      • Map name : The name of the map where the locus is assigned.
      • Locus name : The locus name.
      • Marker name : The marker name.
      • Protocol : The mapping protocol type.
      • Marker type : The marker type.
      • Goal : The marker goal.
      • Sequence name : The sequence name.
      • Gene function (manual annotation) : The manual annotation of the sequence.
      • Sequence / Contig annotation : Link to the sequence / Link to the last annotation obtained with a BLAST.
      • Reliability / (source map name) : The mapping method type / the source map name if the Locus is projected.
      • Linkage group : The linkage group name where the locus is assigned.
      • Bin : The bin where the locus is assigned.
      • Distance : The absolute distance of the locus on the linkage group. If available, in parenthesis the Actual centiMorgan Distances (ACD) computed as described in : http://moulon.inrae.fr/~bioinfo/mbw/irilmap1.html
      • Proximal boundary locus : Proximal boundary locus of the confidence interval (LOD < -3 for the Maize).
      • Distal boundary locus : Distal boundary locus of the confidence interval (LOD < -3 for the Maize).
      • Dist. % : The loci position in percent inside the confidence interval.
      • Intervals : The sub-interval number of the confidence interval.
      • Proximal locus : Closest proximal framework locus flanking the estimated position of the gene.
      • LOD : The LOD Score of the selected sub_interval.
      • Distal locus : Closest distal framework locus flanking the estimated position of the gene.
      • Link to QTL : Link to search the QTL that 's contain the absolute distance of the loci in their confidence interval.
      • Link to QTL large : Link to search the QTL that 's include or overlap the loci confidence interval.
      Result table buttons
      • Export current page to Excel : To create a file with tabs as separator.
      • Graphical display : To allow graphical representation with all the QTL that colocalize in the applet viewer.
      • Select QTL : To allow a sub-selection with criteria of the QTL that 's colocalize with the Loci.

    Back to top
  • QTL results
  • Display all the QTL obtained with a query and all the associated informations.

      Result table header
      • QTL name : The name of the QTL.
      • Theme : The theme name.
      • Trait : The trait name.
      • Trait description : The trait description.
      • Map name : The map name where the QTL is assigned.
      • Linkage group : The linkage group where the qtl is assigned.
      • LOD : The LOD score of the QTL assignment.
      • R2 : The R2 of the QTL assignment.
      • Distance : The absolute distance of the QTL.
      • From : The begin of the confidence interval.
      • to : The end of the confidence interval.
      • Reliability / (source map name) : The mapping method type (unprojected-projected) / the source map name if the QTL is projected.
      • Link to loci : Link to search the Loci that their absolute distance is inside the QTL confidence interval.
      • Link to loci large : Link to search the Loci that their confidence interval is inside or overlap the QTL confidence interval.
      Result table buttons
      • Export current page to Excel : To create a file with tabs as separator.
      • Graphical display : To allow graphical representation with all the QTL that colocalise in the applet viewer.
      • Select QTL : To allow a sub-selection with criteria of the QTL that 's colocalise with the Loci.

    Back to top
  • MetaQTLs
  • Display all the MetaQTL obtained with a query and all the associated informations.

      Result table header
      • MetaQTL : The name of the MetaQTL.
      • Meta-analyse : The meta-analysis name.
      • Meta-trait : The meta-trait name.
      • Trait(s) : Trait beloging to the meta-trait.
      • Map : The map name where the MetaQTL is assigned.
      • Linkage group : The linkage group where the MetaQTL is assigned.
      • From : The begin of the confidence interval.
      • To : The end of the confidence interval.
      • Position : The position of the MetaQTL.
      Result table buttons
      • BioMercator XML export : To export BioMercator XML file.

    Back to top
  • Marker results
  • Display all the markers obtained with a query and all the associated informations.

      Result table header:
      • Taxon : the taxon associated with the current marker.
      • Marker name : the marker name.
      • Marker type : the mapping protocol type used.
      • Marker origin : the marker type.
      • Goal : the marker goal.
      • Gene function (manual annotation) : the manual annotation of the sequence.
      • Link to loci : if any, the link towards the loci obtained with the current marker.
      • Anchored clones : if any, display the list of the anchored clones and forward to the clone card.
      Result table buttons:
      • Export current page to Excel : to export results as a tabbed file.

    Back to top
  • pool results
  • Display all the pools obtained with a query and all the associated informations.

      Result table header:
      • Marker name: the marker name.
      • Pool project: if any, the associated pool project.
      • Anchoring project: if any, the associated anchoring project.
      • Pool set: if any, the associated pool set.
      • Superpool: the number of the superpool which contains the current marker.
      • Plates: if any, the list of all the plates where this marker has anchored.
      • Rows: if any, the list of all the rows where this marker has anchored.
      • Columns: if any, the list of all the columns where this marker has anchored.
      • Mixes: if any, the list of all the mixes where this marker has anchored.
      Result table buttons:
      • Export current page to Excel : to export results as a tabbed file.

    Back to top
  • Crosslink results
  • Display all the crosslinks obtained with a query and all the associated informations.

      Result table header:
      • Db name: the name of the database where the xref point on.
      • Reference name: the name of the crosslink.
      • Reference value: the value of the crosslink, which is a direct link (if the URL is stored in Genetic maps) toward external resources.
      • Type: the reference type.
      • Name: the name of the reference, which is a link toward the appropriate card (inside Genetic maps).
      • Evidence: if any, the evidence of the reference.
      • Contact: if any, the contact associated with the reference.

    Back to top
  • Map results
  • Display all the Maps for the query.

      Result table header
      • Map name : The map name.
      • Population : The population of the map.
      • Taxon : The species.

    Back to top
  • Trait results
  • Display all the Traits for the query.

      Result table header
      • Trait name : The trait name.
      • Trait description : The trait 's description.
      • Genoplante classification : The genoplante classification.
      • Theme : The theme.
      • Keywords : The keywords associated to this trait.
      Result table buttons
      • Export current page to Excel : To create a file with tabs as separator.

    Back to top
  • Sequence results
  • Display all the mapping sequences for a query.

      Result table header
      • Sequence name : The sequence name.
      • Sequence / Contig annotation : Link to the sequence / Link to the last annotation obtained with a BLAST.
      • Link to marker : Link to the markers that obtained with this sequence.
      Result table buttons
      • Export current page to Excel : To create a file with tabs as separator.

    Back to top