Genetic mapping module news
February 04, 2015
The genetic mapping module 14.3 is now available. See the release notes page for more information about changes.
Changes:
- bug fixes
October 01, 2014
The genetic mapping module 14.2 is now available. See the release notes page for more information about changes.
Changes:
- bug fixes
June 04, 2014
The genetic mapping module 14.1 is now available. See the release notes page for more information about changes.
Changes:
- replace module names by thematics
- bug fixes
February 05, 2014
The genetic mapping module 13.3 is now available. See the release notes page for more information about changes.
Changes:
- Bug fixes
September 06, 2013
The genetic mapping module 13.2 is now available. See the release notes page for more information about changes.
Changes:
- Bug fixes
May 06, 2013
The genetic mapping module 13.1 is now available. See the release notes page for more information about changes.
Changes:
- Bug fixes
January 07, 2013
The genetic mapping module 12.4 is now available. See the release notes page for more information about changes.
Changes:
- Add metaQTL link in marker and locus card
- bug fixes
October 05, 2012
The genetic mapping module 12.3 is now available. See the release notes page for more information about changes.
Changes:
- improve MetaQtls interface
- improve marker interface
- change of Blast tool
- bug fixes
July 13, 2012
The genetic mapping module 2.6.1 is now available. See the release notes page for more information about changes.
Changes:
- implement web services for QTL and Map
- add sequences in marker card
- create publication form/results pages
- export MetaAnalysis under BioMercator XML format
- improve textual interface
April 03, 2012
The genetic mapping module 2.6.0 is now available. See the release notes page for more information about changes.
Changes:
- dynamic restrictions on MetaQTL form
- BioMercator full integration
- bug fixes
March 06, 2012
The genetic mapping module 2.5.9 is now available. See the release notes page for more information about changes.
Changes:
- MetaQTL improvements
- web services implementation
- bug fixes
January 12, 2012
The genetic mapping module 2.5.8 is now available. See the release notes page for more information about changes.
Changes:
- improve MetaQTL interface
- bug fixes
November 07, 2011
The genetic mapping module 2.5.7 is now available. See the release notes page for more information about changes.
Changes:
- new design
October 12, 2011
The genetic mapping module 2.5.6 is now available. See the release notes page for more information about changes.
Changes:
- common taxon query form
- search/export of MetaQTLs data
September 01, 2011
The genetic mapping module 2.5.5 is now available. See the release notes page for more information about changes.
Changes:
- add taxon related objects count on taxon card
- bug fixes
June 15, 2011
The genetic mapping module 2.5.4 is now available. See the release notes page for more information about changes.
Changes:
- XML export refactoring
- bug fixes
May 03, 2011
The genetic mapping module 2.5.3 is now available. See the release notes page for more information about changes.
Changes:
- common project and contact card
- bug fixes
March 24, 2011
The genetic mapping module 2.5.2 is now available. See the release notes page for more information about changes.
Changes:
- bug fixes
March 02, 2011
The genetic mapping module 2.5.1 is now available. See the release notes page for more information about changes.
Changes:
- export loci to BioMercator
- bug fixes
December 06, 2010
The genetic mapping module 2.5.0 is now available. See the release notes page for more information about changes.
Changes:
- BioMercator integration
- link with GnpSNP for primers
July 30, 2010
The genetic mapping module 2.4.1 is now available. See the release notes page for more information about changes.
Changes:
- design updates
- bug fixes
April 20, 2010
The genetic mapping module 2.4.0 is now available. See the release notes page for more information about changes.
Changes:
- merged all taxonomy informations between GnpIS modules
- bug fixes
October 09th 2009
The genetic mapping module 2.3.2 is now available. See the release notes page for more information about changes.
Changes:
- add link towards cross-references from taxon card
- restrict digits number after comma for numeric values
- bug fixes
June 29th 2009
The genetic mapping module 2.3.1 is now available. See the release notes page for more information about changes.
Changes:
- use internal RMI registry
- bug fixes
June 26th 2009
The genetic mapping module 2.3 is now available. See the release notes page for more information about changes.
Changes:
- old map versions are hidden
- bug fixes
March 25th 2009
GnpMap 2.2 is now available. See the release notes page for more information about changes.
Changes:
- bug fixes
February 28th 2009
GnpMap 2.2 is now available. See the release notes page for more information about changes.
Changes:
- internal evolutions
- bug fixes
- design evolution
- add search field in the top bar
Dec 18th 2006
The new GnpMap 2.1 final release is now available. See the release notes page for more information about changes.
Changes:
- minor bug fixes
Sep 25th 2006
The new GnpMap 2.0 final release is now available. See the release notes page for more information about changes.
Changes:
- new links toward external resources from Sequence card
- minor bug fixes
Sep 18th 2006
The second release candidate for GnpMap 2.0 is now available. See the release notes page for more information about changes.
Changes:
- new links toward GnpSeq from Clone card
- bug fixes
Aug 3rd 2006
The first release candidate for GnpMap 2.0 is now available. See the release notes page for more information about changes.
Changes:
- update and simplify the marker part (query, results and card page)
- add pool query fonctionnalities
- add crosslinks query fonctionnalities
- update design on all GnpMap applications
February 23th 2006
Changes:
- update design on public site
February 17th 2006
Changes:
- add loading image on index page
- change results navigation tool design
- general design updates
- add link to application description page in the menu
- upgrade the maximum number of results that the user can display on a result page to 100
- database evolutions
17th october 2005
Changes:
- Add support for wheat's QTL without point's assignment
September 2nd 2005
bug fixed:
- drawing export from textual interface has been fixed
June 15th 2005
new feature:
- add support for cytogenetic maps
April 29th 2005
Changes:
- add new style for all forms
January 10th 2005
Changes:
- update documentation and news
October 2004
Changes:
- new design
- new pagination system
February 02th 2004
Changes:
- several search text fields are no more case sensitive (Marker name, experiment name, qtl name, etc.)
-
new fields for the search :
-
Loci/Marker
- sequence name
- goal of the marker (gene / anonymous)
- reliability (framework, manual, automatic, etc.
-
Qtl
- Genoplante classification
-
Trait
- Trait name
- species
- Genoplante classification
- Keywords
-
Loci/Marker
August 13th 2003
Changes:
- graphical display for the Loci results and QTL results in the mapComparator applet
- query on Loci and on Marker by marker: the gene function list is now avalaible in another browser window. You can made copy and paste it for your request on it.
-
display:
- links from the "Map Display" page to loci and QTL assignments have been added
- the keyword page "Keyword Display" have been created
- a link from "Display Experimentation" , "Display Trait" and "Display Measure" pages to the "QTL Results" page have been added
- experimentation name and link from "Display Trait" to "Display Experimentation" have been added for each measure of a trait
April 30th 2003
Changes:
- Text research is no more with an automatic wildcard at the end. For the field indicated with a (*), you can add a '%', if you need wildcard.
-
Query on QTL:
- Add a search between two positions in the request by loci.
- The two positions define an interval. This method search all the loci having a confidence interval include/overlapping this interval.
- Add target and contact fields in the request by marker.
- Query with Gene function can be made with % and its no more case sensitif.
- (The list of all gene function is given for information and is no more functionnel.)
- The method to search loci between two loci has changed
- The two loci define an interval. Now, this method search all the loci having a confidence interval (and no more the absolute distance) include/overlapping this interval.
-
query on Loci:
- Add a search between two positions in the request by loci.
- The two positions define an interval. This method search all the loci having a confidence interval include/overlapping this interval.
- Add target and contact fields in the request by marker.
- Query with Gene function can be made with % and its no more case sensitif.
- (The list of all gene function is given for information and is no more functionnel.)
- The method to search loci between two loci has changed.
- The two loci define an interval. Now, this method search all the loci having a confidence interval (and no more the absolute distance) include/overlapping this interval.
-
query on Marker:
- Query with Gene function can be made with % and its no more case sensitif.
- (The list of all gene function is given for information and is no more functionnel.)
-
display:
- The locus page "Display Locus" have been created.
- The cofactors are in the database and displayed in "Display Qtl Detection" page.
- The sequence name field have been added in Marker and Loci results with a link to the sequence interface.
- Add the number of QTLs for each measure on the "Display Experimentation" and "Display Trait" pages.
- For the projected QTL , the lod and R2 have been filled with the values of the unprojected QTL.
-
table of results (Loci, QTL, Marker):
- Add link "Link to QTL Large" on "Loci Results" page.
- This link takes the loci confidence interval into account to retrieve the QTLs. The other link ( "QTL to Loci" ) is used only the absolute distance of the loci.
- Add Link "Link to Loci Large" on "QTL Results" page.
- This link takes the loci confidence interval into account to retrieve the loci. The other link ( "Loci to QTL" ) is used only the absolute distance of the loci.
- Add function : "Export to Excel" for the three table results.