Genetic mapping module news

February 04, 2015

The genetic mapping module 14.3 is now available. See the release notes page for more information about changes.

Changes:

  • bug fixes

October 01, 2014

The genetic mapping module 14.2 is now available. See the release notes page for more information about changes.

Changes:

  • bug fixes

June 04, 2014

The genetic mapping module 14.1 is now available. See the release notes page for more information about changes.

Changes:

  • replace module names by thematics
  • bug fixes

February 05, 2014

The genetic mapping module 13.3 is now available. See the release notes page for more information about changes.

Changes:

  • Bug fixes

September 06, 2013

The genetic mapping module 13.2 is now available. See the release notes page for more information about changes.

Changes:

  • Bug fixes

May 06, 2013

The genetic mapping module 13.1 is now available. See the release notes page for more information about changes.

Changes:

  • Bug fixes

January 07, 2013

The genetic mapping module 12.4 is now available. See the release notes page for more information about changes.

Changes:

  • Add metaQTL link in marker and locus card
  • bug fixes

October 05, 2012

The genetic mapping module 12.3 is now available. See the release notes page for more information about changes.

Changes:

  • improve MetaQtls interface
  • improve marker interface
  • change of Blast tool
  • bug fixes

July 13, 2012

The genetic mapping module 2.6.1 is now available. See the release notes page for more information about changes.

Changes:

  • implement web services for QTL and Map
  • add sequences in marker card
  • create publication form/results pages
  • export MetaAnalysis under BioMercator XML format
  • improve textual interface

April 03, 2012

The genetic mapping module 2.6.0 is now available. See the release notes page for more information about changes.

Changes:

  • dynamic restrictions on MetaQTL form
  • BioMercator full integration
  • bug fixes

March 06, 2012

The genetic mapping module 2.5.9 is now available. See the release notes page for more information about changes.

Changes:

  • MetaQTL improvements
  • web services implementation
  • bug fixes

January 12, 2012

The genetic mapping module 2.5.8 is now available. See the release notes page for more information about changes.

Changes:

  • improve MetaQTL interface
  • bug fixes

November 07, 2011

The genetic mapping module 2.5.7 is now available. See the release notes page for more information about changes.

Changes:

  • new design

October 12, 2011

The genetic mapping module 2.5.6 is now available. See the release notes page for more information about changes.

Changes:

  • common taxon query form
  • search/export of MetaQTLs data

September 01, 2011

The genetic mapping module 2.5.5 is now available. See the release notes page for more information about changes.

Changes:

  • add taxon related objects count on taxon card
  • bug fixes

June 15, 2011

The genetic mapping module 2.5.4 is now available. See the release notes page for more information about changes.

Changes:

  • XML export refactoring
  • bug fixes

May 03, 2011

The genetic mapping module 2.5.3 is now available. See the release notes page for more information about changes.

Changes:

  • common project and contact card
  • bug fixes

March 24, 2011

The genetic mapping module 2.5.2 is now available. See the release notes page for more information about changes.

Changes:

  • bug fixes

March 02, 2011

The genetic mapping module 2.5.1 is now available. See the release notes page for more information about changes.

Changes:

  • export loci to BioMercator
  • bug fixes

December 06, 2010

The genetic mapping module 2.5.0 is now available. See the release notes page for more information about changes.

Changes:

  • BioMercator integration
  • link with GnpSNP for primers

July 30, 2010

The genetic mapping module 2.4.1 is now available. See the release notes page for more information about changes.

Changes:

  • design updates
  • bug fixes

April 20, 2010

The genetic mapping module 2.4.0 is now available. See the release notes page for more information about changes.

Changes:

  • merged all taxonomy informations between GnpIS modules
  • bug fixes

October 09th 2009

The genetic mapping module 2.3.2 is now available. See the release notes page for more information about changes.

Changes:

  • add link towards cross-references from taxon card
  • restrict digits number after comma for numeric values
  • bug fixes

June 29th 2009

The genetic mapping module 2.3.1 is now available. See the release notes page for more information about changes.

Changes:

  • use internal RMI registry
  • bug fixes

June 26th 2009

The genetic mapping module 2.3 is now available. See the release notes page for more information about changes.

Changes:

  • old map versions are hidden
  • bug fixes

March 25th 2009

GnpMap 2.2 is now available. See the release notes page for more information about changes.

Changes:

  • bug fixes

February 28th 2009

GnpMap 2.2 is now available. See the release notes page for more information about changes.

Changes:

  • internal evolutions
  • bug fixes
  • design evolution
  • add search field in the top bar

Dec 18th 2006

The new GnpMap 2.1 final release is now available. See the release notes page for more information about changes.

Changes:

  • minor bug fixes

Sep 25th 2006

The new GnpMap 2.0 final release is now available. See the release notes page for more information about changes.

Changes:

  • new links toward external resources from Sequence card
  • minor bug fixes

Sep 18th 2006

The second release candidate for GnpMap 2.0 is now available. See the release notes page for more information about changes.

Changes:

  • new links toward GnpSeq from Clone card
  • bug fixes

Aug 3rd 2006

The first release candidate for GnpMap 2.0 is now available. See the release notes page for more information about changes.

Changes:

  • update and simplify the marker part (query, results and card page)
  • add pool query fonctionnalities
  • add crosslinks query fonctionnalities
  • update design on all GnpMap applications

February 23th 2006

Changes:

  • update design on public site

February 17th 2006

Changes:

  • add loading image on index page
  • change results navigation tool design
  • general design updates
  • add link to application description page in the menu
  • upgrade the maximum number of results that the user can display on a result page to 100
  • database evolutions

17th october 2005

Changes:

  • Add support for wheat's QTL without point's assignment

September 2nd 2005

bug fixed:

  • drawing export from textual interface has been fixed

June 15th 2005

new feature:

  • add support for cytogenetic maps

April 29th 2005

Changes:

  • add new style for all forms

January 10th 2005

Changes:

  • update documentation and news

October 2004

Changes:

  • new design
  • new pagination system

February 02th 2004

Changes:

  • several search text fields are no more case sensitive (Marker name, experiment name, qtl name, etc.)
  • new fields for the search :
    • Loci/Marker
      • sequence name
      • goal of the marker (gene / anonymous)
      • reliability (framework, manual, automatic, etc.
    • Qtl
      • Genoplante classification
    • Trait
      • Trait name
      • species
      • Genoplante classification
      • Keywords

August 13th 2003

Changes:

  • graphical display for the Loci results and QTL results in the mapComparator applet
  • query on Loci and on Marker by marker: the gene function list is now avalaible in another browser window. You can made copy and paste it for your request on it.
  • display:
    • links from the "Map Display" page to loci and QTL assignments have been added
    • the keyword page "Keyword Display" have been created
    • a link from "Display Experimentation" , "Display Trait" and "Display Measure" pages to the "QTL Results" page have been added
    • experimentation name and link from "Display Trait" to "Display Experimentation" have been added for each measure of a trait

April 30th 2003

Changes:

  • Text research is no more with an automatic wildcard at the end. For the field indicated with a (*), you can add a '%', if you need wildcard.
  • Query on QTL:
    • Add a search between two positions in the request by loci.
    • The two positions define an interval. This method search all the loci having a confidence interval include/overlapping this interval.
    • Add target and contact fields in the request by marker.
    • Query with Gene function can be made with % and its no more case sensitif.
    • (The list of all gene function is given for information and is no more functionnel.)
    • The method to search loci between two loci has changed
    • The two loci define an interval. Now, this method search all the loci having a confidence interval (and no more the absolute distance) include/overlapping this interval.
  • query on Loci:
    • Add a search between two positions in the request by loci.
    • The two positions define an interval. This method search all the loci having a confidence interval include/overlapping this interval.
    • Add target and contact fields in the request by marker.
    • Query with Gene function can be made with % and its no more case sensitif.
    • (The list of all gene function is given for information and is no more functionnel.)
    • The method to search loci between two loci has changed.
    • The two loci define an interval. Now, this method search all the loci having a confidence interval (and no more the absolute distance) include/overlapping this interval.
  • query on Marker:
    • Query with Gene function can be made with % and its no more case sensitif.
    • (The list of all gene function is given for information and is no more functionnel.)
  • display:
    • The locus page "Display Locus" have been created.
    • The cofactors are in the database and displayed in "Display Qtl Detection" page.
    • The sequence name field have been added in Marker and Loci results with a link to the sequence interface.
    • Add the number of QTLs for each measure on the "Display Experimentation" and "Display Trait" pages.
    • For the projected QTL , the lod and R2 have been filled with the values of the unprojected QTL.
  • table of results (Loci, QTL, Marker):
    • Add link "Link to QTL Large" on "Loci Results" page.
    • This link takes the loci confidence interval into account to retrieve the QTLs. The other link ( "QTL to Loci" ) is used only the absolute distance of the loci.
    • Add Link "Link to Loci Large" on "QTL Results" page.
    • This link takes the loci confidence interval into account to retrieve the loci. The other link ( "Loci to QTL" ) is used only the absolute distance of the loci.
    • Add function : "Export to Excel" for the three table results.