General instructions to submit data.

Please note that all data submission must be included either in a collaborative project or in URGI data service offer. See General instructions for further information.

Overview for Phenotyping data

The workflow developed for the Vitis community gives an overview of the good practices for integrating phenotyping data.

It can be downloaded here: FluxInfo_Vigne1-7.pdf

Project data

Submission of project, contacts, institutions and publications

Use the excel file to submit your data:

• Excel file: Submit_Project.xlsx
• Submit your data file using the submission interface

Ontology data

Submission of ontology and observation variables 

Many Variables are already available in GnpIS ontologies. Search the variables you need to use in the GnpIS Ontology Portal

If your species is not already present in the ontology list, you can create a new ontology following the Crop Ontology trait template V5 below.

If your species is present but you are missing some variables, you can download the existing ontology and add new terms.

• Excel file: Crop Ontology TV5
• Crop Ontology Guidelines: 11_05_2018_CropOntology_Curation_Guidelines.pdf
• Submit your data file using the submission interface

Phenotype data

Submission of trial and experimental data for crops 

 
Use the excel file to submit your data:

• Single observations: Submit_Ephesis.xlsx
• Time series: Submit_Ephesis_time_serie.xlsx
• Submit your data file using the submission interface
• Full documentation available here in french: README-FR.pdf

Submission of trial and experimental data for forest trees

 
To submit your data:

• Fill this excel file : Submit_Trials_EFPA.xlsx
• Use the Woody Plant Ontology to declare your variables:
  • Excel file: WoodyPlantOntology_v*.xls
  • Ontology tree: Woody Plant Ontology (CO_357)
• Submit your data file using the submission interface

Examples

Multi year Vitis Trial

• Excel file year 1: SubmitEphesis-example-year1.xls

• Excel file year 2: SubmitEphesis-example-year2.xls

• You can preview this example in GnpIS here:  https://urgi.versailles.inra.fr/ephesis/ephesis/viewer.do#dataResults/trialIds=821