Vitis vinifera (12x) Genome Browser

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New names of gene in 12X version according to the genome release at EMBL : GSVIVG00 to GSVIVG01
New tracks available : Gene prediction (named V1) produced by CRIBI on the 12X sequence assembly. This V1 annotation is divided in V1_NR (non repetitive sequences) and V1_R (repetitive sequences)

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Examples: chr15:5282664..5322663, GSVIVG01032605001, EGT00018252001, SNAPVvG00016689001, GWSUNIT02500482001, VVII52, VV40024H100E01, Vv_10003495, Vv10s0116g00040, GSVIVG01001153001, NEW20, VVTPS65, SNP_Vv_1272338, indel_Vv_1272543, SNP_Vv_1273469, PN40024_heterozygous_SNPs_chr1_4012677, PN40024_seqErr_SNPs_chr1_1252920, SNP_ENSVVVI00100380.

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The following 2 regions match your request.

chr7

Name Type Description Position Match Score

GSVIVG01001153001 gene chr7:1251671..1258313 233.5192

GSVIVG01001153001 gene chr7:1251671..1257702 n/a

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Tracks
Tracks

Abinitio Prediction
Abinitio Prediction
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EuGene (ab initio) Geneid SNAP

Expression Level V1.0 Qiagen
Expression Level V1.0 Qiagen
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Transcriptomic experiments (Full ratio)

Gene Manual Curation
Gene Manual Curation
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Terpene synthase (TPS)

Gene annotations
Gene annotations
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Genoscope annotation (Gaze) V1_NR polypeptide V1_R polypeptide

Transcript phases (Gaze) V1_NR transcript V1_R transcript

General
General
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BAC clones PN40024 Marker Scaffold

Microarray Probes
Microarray Probes
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Oligoset V1.0 Qiagen

Polymorphism
Polymorphism
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Alleles Tower (indels) of BerrySize project Alleles Tower (SNPs) of Residual Heterozygosity of PN40024 SNP (GnpSNP) of Fleshless project

Alleles Tower (indels) of Fleshless project Alleles Tower (SNPs) of SNPs from Sean Myles et al. (Ensembl Plants Variation 12) SNPs: Putative sequencing errors of PN40024

Alleles Tower (SNPs) of BerrySize project indels (GnpSNP) of BerrySize project SNPs: Residual Heterozygosity of PN40024 (GnpSNP)

Alleles Tower (SNPs) of Fleshless project indels (GnpSNP) of Fleshless project SNPs: Sean Myles et al. (Ensembl Plants Variation 12)

Alleles Tower (SNPs) of Putative sequencing errors of PN40024 SNP (GnpSNP) of BerrySize project

Repeats
Repeats
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Repeats (RepeatMasker) Tandem_repeats (Tandem Repeats Finder)

Short Reads and ESTs
Short Reads and ESTs
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G-Mo.R-Se models (all multiexonic) Vitis vinifera cDNA Vitis vinifera EST contig (454 Short Reads)

Redundant Vitis vinifera public EST Vitis vinifera cDNA contig Vitis vinifera public EST

Similarity
Similarity
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Genewise (Uniprot)

MRNA
MRNA
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NCBI (24395) public mRNA (Vitis sp.)

Overview
Overview
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Markers Scaffold

Analysis
Analysis
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DNA/GC_content

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Generic Genome Browser version 2.33. For questions about the data at this site, please send mail to urgi-support@versailles.inra.fr..