This document is the installation manual for the AGENT Portable Data Analysis Pipeline, a ready-packaged tool pipeline to support the analysis of large-scale genotyping data, with a particular focus on the genomics of genebanks. It has been developed as part of the AGENT project (http://www.agent-project.eu). This Manual describes the necessary setup to enable its use under Windows, macOS, and LINUX for the AGENT 2nd Training workshop: "Training of trainers to enable local dissemination of knowledge ...

This document is the user manual for the AGENT Portable Data Analysis Pipeline, a ready-packaged tool pipeline to support the analysis of large-scale genotyping data, with a particular focus on the genomics of genebanks. It has been developed as part of the AGENT project (http://www.agent-project.eu). This Manual describes the necessary setup to enable its use under Windows, macOS, and LINUX.