WheatMine

1. IWGSC Reference Sequence

   
   
   • IWGSC RefSeq v1.0 scaffolds
   • IWGSC RefSeq v1.0 superScaffolds
   
   

2. Gene Model

   
   
   • High Confidence Genes from v1.0 and v1.1 annotation
   • Low Confidence Genes from v1.0 and v1.1 annotation
   
   

3. Transposable Elements

   
   
   • CLARITE (TE model): TE classification made by ClariTE (Daron et al 2014).
   
   

4. Markers

   
   
   • SNP (iSelect, Infinium9K, Infinium90K, Bristol, Axiom 820K)
   • DArTs (GBS,public,ver3)
   • EST (Nfs, Sourdille, wEST mapped)
   • SSR (Cfa,Cfd,Wmc,Wms,Barc,Gdm,Barc accessions)
   • MAS markers
   • Cfn markers from BreedWheat project
   
   

5. RNA

   
   
   • miRNA
   • lncRNA
   • tRNA

Cite this resource

Data are also available through:

• the IWGSC RefSeq v1.0 JBrowse.
• the assembly page on the wheat sequence repository.
• the annotation page on the wheat sequence repository.
  
  
  

  

  

  
  
  
  
  
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  Cite us: Smith RN, et al. InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics. 2012 Dec 1;28(23):3163-5.

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