Protein : Qrob_P0538100.2 Q. robur
Protein Identifier  ? Qrob_P0538100.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K15188 - cyclin T Gene Prediction Quality  validated
Protein length 

Sequence

Length: 427  
Kegg Orthology  K15188
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.
GO:0019901 protein kinase binding Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103487992 10 425 + 416 Gaps:17 92.73 454 58.19 2e-159 cyclin-T1-3-like
blastp_kegg lcl|pop:POPTR_0002s03360g 1 426 + 426 Gaps:19 97.89 426 58.03 2e-154 POPTRDRAFT_816053 cyclin family protein
blastp_kegg lcl|rcu:RCOM_1595310 1 426 + 426 Gaps:19 95.38 433 58.11 5e-149 cyclin-dependent protein kinase putative
blastp_kegg lcl|tcc:TCM_034099 1 402 + 402 Gaps:52 82.75 539 54.26 3e-144 Cyclin family protein putative isoform 1
blastp_kegg lcl|fve:101315019 1 425 + 425 Gaps:19 94.78 441 56.70 4e-144 cyclin-T1-5-like
blastp_kegg lcl|mdm:103440306 3 424 + 422 Gaps:34 93.62 423 57.83 7e-136 cyclin-T1-3
blastp_kegg lcl|csv:101214841 10 425 + 416 Gaps:40 92.31 429 57.07 9e-135 cyclin-T1-3-like
blastp_kegg lcl|sot:102600355 1 410 + 410 Gaps:17 96.46 424 51.10 7e-131 cyclin-T1-3-like
blastp_kegg lcl|vvi:100266147 1 426 + 426 Gaps:14 94.12 442 53.61 5e-130 cyclin-T1-4-like
blastp_kegg lcl|sly:101250904 1 410 + 410 Gaps:17 67.38 607 51.34 3e-128 cyclin-T1-3-like
blastp_pdb 2i53_A 12 256 + 245 Gaps:19 94.57 258 31.97 4e-29 mol:protein length:258 Cyclin K
blastp_pdb 2pk2_D 1 225 + 225 Gaps:9 62.01 358 32.43 1e-28 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 2pk2_C 1 225 + 225 Gaps:9 62.01 358 32.43 1e-28 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 2pk2_B 1 225 + 225 Gaps:9 62.01 358 32.43 1e-28 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 2pk2_A 1 225 + 225 Gaps:9 62.01 358 32.43 1e-28 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 3mia_B 1 225 + 225 Gaps:9 83.46 266 32.43 1e-28 mol:protein length:266 Cyclin-T1
blastp_pdb 3mi9_B 1 225 + 225 Gaps:9 83.46 266 32.43 1e-28 mol:protein length:266 Cyclin-T1
blastp_pdb 3tni_B 1 225 + 225 Gaps:9 85.71 259 32.43 1e-28 mol:protein length:259 Cyclin-T1
blastp_pdb 3tnh_B 1 225 + 225 Gaps:9 85.71 259 32.43 1e-28 mol:protein length:259 Cyclin-T1
blastp_pdb 2w2h_B 10 265 + 256 Gaps:12 96.21 264 30.71 1e-28 mol:protein length:264 CYCLIN-T1
blastp_uniprot_sprot sp|Q2RAC5|CCT13_ORYSJ 12 425 + 414 Gaps:39 79.39 490 48.07 8e-107 Cyclin-T1-3 OS Oryza sativa subsp. japonica GN CYCT1-3 PE 3 SV 2
blastp_uniprot_sprot sp|Q2QQS5|CCT14_ORYSJ 2 425 + 424 Gaps:36 81.77 543 43.47 5e-105 Cyclin-T1-4 OS Oryza sativa subsp. japonica GN CYCT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKE6|CCT15_ARATH 11 351 + 341 Gaps:29 56.99 579 50.61 1e-96 Cyclin-T1-5 OS Arabidopsis thaliana GN CYCT1-5 PE 2 SV 2
blastp_uniprot_sprot sp|Q8GYM6|CCT14_ARATH 11 250 + 240 Gaps:5 44.18 541 58.16 1e-94 Cyclin-T1-4 OS Arabidopsis thaliana GN CYCT1-4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LBC0|CCT13_ARATH 9 242 + 234 Gaps:5 72.87 317 63.20 9e-92 Cyclin-T1-3 OS Arabidopsis thaliana GN CYCT1-3 PE 1 SV 2
blastp_uniprot_sprot sp|Q0E474|CCT11_ORYSJ 12 242 + 231 Gaps:5 51.57 446 57.39 1e-82 Cyclin-T1-1 OS Oryza sativa subsp. japonica GN CYCT1-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q6Z7H3|CCT12_ORYSJ 12 242 + 231 Gaps:4 36.67 630 54.55 2e-78 Cyclin-T1-2 OS Oryza sativa subsp. japonica GN CYCT1_2 PE 2 SV 2
blastp_uniprot_sprot sp|Q56YF8|CCT12_ARATH 12 243 + 232 Gaps:10 50.00 460 56.96 2e-75 Cyclin-T1-2 OS Arabidopsis thaliana GN CYCT1-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8P7|CCT11_ARATH 9 250 + 242 Gaps:14 95.55 247 44.92 2e-56 Putative cyclin-T1-1 OS Arabidopsis thaliana GN CYCT1-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9AS36|CCL11_ORYSJ 12 286 + 275 Gaps:15 65.57 427 29.64 5e-33 Cyclin-L1-1 OS Oryza sativa subsp. japonica GN CYCL1-1 PE 2 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 44 147 104 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
SMART 160 248 89 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
Pfam 12 153 142 PF00134 none Cyclin, N-terminal domain IPR006671
PANTHER 12 279 268 PTHR10026:SF51 none none none
Gene3D 175 242 68 G3DSA:1.10.472.10 none none IPR013763
PANTHER 12 279 268 PTHR10026 none none IPR015429
SUPERFAMILY 157 243 87 SSF47954 none none IPR013763
SUPERFAMILY 7 153 147 SSF47954 none none IPR013763
Pfam 172 259 88 PF02984 none Cyclin, C-terminal domain IPR004367
Gene3D 5 174 170 G3DSA:1.10.472.10 none none IPR013763

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting