Protein : Qrob_P0513970.2 Q. robur
Protein Identifier  ? Qrob_P0513970.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=34) K15032 - mTERF domain-containing protein, mitochondrial Gene Prediction Quality  validated
Protein length 

Sequence

Length: 377  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100245862 35 317 + 283 Gaps:51 82.88 403 47.60 7e-90 uncharacterized LOC100245862
blastp_kegg lcl|vvi:100256384 41 318 + 278 Gaps:55 83.08 396 44.07 4e-84 uncharacterized LOC100256384
blastp_kegg lcl|vvi:100240766 35 321 + 287 Gaps:54 88.80 384 46.04 2e-83 uncharacterized LOC100240766
blastp_kegg lcl|vvi:100252802 33 318 + 286 Gaps:56 84.71 399 45.86 2e-82 uncharacterized LOC100252802
blastp_kegg lcl|rcu:RCOM_0089610 12 334 + 323 Gaps:55 83.45 441 41.85 2e-81 hypothetical protein
blastp_kegg lcl|vvi:100251002 41 317 + 277 Gaps:55 82.62 397 45.12 5e-80 uncharacterized LOC100251002
blastp_kegg lcl|vvi:100257952 41 318 + 278 Gaps:55 84.58 389 44.38 2e-77 uncharacterized LOC100257952
blastp_kegg lcl|pop:POPTR_0012s04420g 30 318 + 289 Gaps:52 87.37 388 43.36 6e-72 POPTRDRAFT_569735 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s02330g 23 306 + 284 Gaps:54 88.59 377 40.12 1e-71 hypothetical protein
blastp_kegg lcl|pop:POPTR_0816s00200g 14 318 + 305 Gaps:57 94.82 367 42.24 9e-71 hypothetical protein
rpsblast_cdd gnl|CDD|202273 28 288 + 261 Gaps:85 95.36 345 31.91 4e-11 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_kog gnl|CDD|36481 18 352 + 335 Gaps:69 90.07 413 20.70 4e-18 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 345 366 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 170 192 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 213 344 132 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 23 366 344 PTHR13068 none none none
PANTHER 23 366 344 PTHR13068:SF15 none none none
Phobius 1 146 146 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 147 169 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 92 123 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 251 285 35 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 166 196 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 128 160 33 SM00733 none Mitochondrial termination factor repeats IPR003690
Phobius 193 212 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 238 286 49 PF02536 none mTERF IPR003690
Pfam 80 156 77 PF02536 none mTERF IPR003690
Phobius 367 376 10 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 344 366 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting