Protein : Qrob_P0017120.2 Q. robur
Protein Identifier  ? Qrob_P0017120.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=22) PTHR31989:SF5 - F11O4.3-RELATED (PTHR31989:SF5) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 574  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003239mg 1 573 + 573 Gaps:35 100.00 590 62.54 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331478 1 573 + 573 Gaps:36 100.00 591 61.42 0.0 NAC domain-containing protein 78
blastp_kegg lcl|pxb:103938370 9 573 + 565 Gaps:48 98.85 608 60.90 0.0 NAC domain-containing protein 78-like
blastp_kegg lcl|tcc:TCM_043360 6 573 + 568 Gaps:72 99.32 590 61.26 0.0 NAC domain containing protein 2 putative isoform 2
blastp_kegg lcl|mdm:103408317 9 573 + 565 Gaps:43 98.85 609 59.63 0.0 NAC domain-containing protein 78-like
blastp_kegg lcl|mdm:103402800 9 573 + 565 Gaps:47 98.84 603 59.90 0.0 NAC domain-containing protein 78-like
blastp_kegg lcl|pxb:103951717 9 573 + 565 Gaps:41 98.81 589 60.65 0.0 NAC domain-containing protein 78-like
blastp_kegg lcl|pop:POPTR_0010s23650g 1 573 + 573 Gaps:39 100.00 556 61.51 0.0 POPTRDRAFT_228193 NAC domain-containing protein 78
blastp_kegg lcl|pop:POPTR_0008s03170g 1 573 + 573 Gaps:73 100.00 568 61.44 0.0 POPTRDRAFT_420074 NAC domain-containing protein 78
blastp_kegg lcl|cit:102623273 1 573 + 573 Gaps:38 100.00 549 61.38 0.0 NAC domain-containing protein 78-like
blastp_pdb 3ulx_A 5 160 + 156 Gaps:7 91.38 174 49.69 5e-47 mol:protein length:174 Stress-induced transcription factor NAC1
blastp_pdb 3swp_D 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 3swp_C 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 3swp_B 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 3swp_A 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 3swm_D 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 3swm_C 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 3swm_B 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 3swm_A 6 166 + 161 Gaps:2 91.38 174 48.43 2e-45 mol:protein length:174 NAC domain-containing protein 19
blastp_pdb 4dul_B 9 166 + 158 Gaps:2 91.23 171 49.36 2e-45 mol:protein length:171 NAC domain-containing protein 19
blastp_uniprot_sprot sp|Q84K00|NAC78_ARATH 1 573 + 573 Gaps:88 100.00 567 53.79 1e-166 NAC domain-containing protein 78 OS Arabidopsis thaliana GN NAC078 PE 2 SV 2
blastp_uniprot_sprot sp|Q7GCL7|NAC74_ORYSJ 10 170 + 161 none 32.92 489 49.69 2e-50 NAC domain-containing protein 74 OS Oryza sativa subsp. japonica GN NAC74 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FLJ2|NC100_ARATH 3 166 + 164 Gaps:8 48.81 336 53.66 6e-50 NAC domain-containing protein 100 OS Arabidopsis thaliana GN NAC100 PE 2 SV 1
blastp_uniprot_sprot sp|Q52QH4|NAC68_ORYSJ 5 160 + 156 Gaps:8 50.31 318 52.50 1e-49 NAC domain-containing protein 68 OS Oryza sativa subsp. japonica GN NAC68 PE 2 SV 1
blastp_uniprot_sprot sp|O49255|NAC29_ARATH 6 219 + 214 Gaps:10 80.60 268 43.06 1e-48 NAC transcription factor 29 OS Arabidopsis thaliana GN NAC029 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SV87|BRN2_ARATH 6 160 + 155 Gaps:1 45.75 341 51.28 3e-48 Protein BEARSKIN1 OS Arabidopsis thaliana GN BRN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FRV4|NAC54_ARATH 3 163 + 161 Gaps:8 52.58 310 54.60 1e-47 Protein CUP-SHAPED COTYLEDON 1 OS Arabidopsis thaliana GN NAC054 PE 1 SV 1
blastp_uniprot_sprot sp|Q93VY3|NAC72_ARATH 9 161 + 153 Gaps:2 50.84 297 52.98 3e-47 NAC domain-containing protein 72 OS Arabidopsis thaliana GN NAC072 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C878|BRN1_ARATH 6 160 + 155 Gaps:4 50.16 305 50.98 3e-46 Protein BEARSKIN1 OS Arabidopsis thaliana GN BRN1 PE 2 SV 1
blastp_uniprot_sprot sp|Q39013|NAC2_ARATH 10 179 + 170 Gaps:11 60.55 289 49.14 1e-45 NAC domain-containing protein 2 OS Arabidopsis thaliana GN NAC002 PE 2 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 10 160 151 PS51005 none NAC domain profile. IPR003441
Phobius 573 573 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 495 495 PTHR31989 none none none
Phobius 551 572 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 550 550 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 495 495 PTHR31989:SF5 none none none
Pfam 10 137 128 PF02365 none No apical meristem (NAM) protein IPR003441
SUPERFAMILY 8 160 153 SSF101941 none none IPR003441

1 Localization

Analysis Start End Length
TMHMM 550 572 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting