Protein : Qrob_P0004690.2 Q. robur
Protein Identifier  ? Qrob_P0004690.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0113//KOG0147//KOG0151//KOG0670//KOG0794//KOG0834//KOG0835//KOG2888//KOG4676 - U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]. // Transcriptional coactivator CAPER (RRM superfamily) [Transcription]. // Predicted splicing regulator contains RRM SWAP and RPR domains [General function prediction only]. // U4/U6-associated splicing factor PRP4 [RNA processing and modification]. // CDK8 kinase-activating protein cyclin C [Transcription]. // CDK9 kinase-activating protein cyclin T [Cell cycle control cell division chromosome partitioning]. // Cyclin L [General function prediction only]. // Putative RNA binding protein [General function prediction only]. // Splicing factor arginine/serine-rich [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 447  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.
GO:0019901 protein kinase binding Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241975 1 446 + 446 Gaps:15 100.00 451 78.05 0.0 cyclin-L1-1-like
blastp_kegg lcl|fve:101310327 1 446 + 446 Gaps:16 100.00 442 74.89 0.0 cyclin-L1-1-like
blastp_kegg lcl|pper:PRUPE_ppa005678mg 1 446 + 446 Gaps:10 100.00 448 75.00 0.0 hypothetical protein
blastp_kegg lcl|cmo:103492172 1 443 + 443 Gaps:8 100.00 443 73.36 0.0 cyclin-L1-1
blastp_kegg lcl|csv:101207220 1 443 + 443 Gaps:8 100.00 443 73.36 0.0 cyclin-L1-1-like
blastp_kegg lcl|tcc:TCM_043086 1 446 + 446 Gaps:11 100.00 457 76.15 0.0 Arginine-rich cyclin 1
blastp_kegg lcl|cit:102614657 1 443 + 443 Gaps:10 100.00 445 76.40 0.0 cyclin-L1-1-like
blastp_kegg lcl|pmum:103344704 1 446 + 446 Gaps:18 100.00 456 72.81 0.0 cyclin-L1-1
blastp_kegg lcl|pvu:PHAVU_007G183500g 1 443 + 443 Gaps:8 100.00 447 73.60 0.0 hypothetical protein
blastp_kegg lcl|gmx:100815690 1 443 + 443 Gaps:9 100.00 448 73.88 0.0 cyclin-L1-1-like
blastp_pdb 2i53_A 9 246 + 238 Gaps:21 93.41 258 32.78 4e-30 mol:protein length:258 Cyclin K
blastp_pdb 2pk2_D 9 224 + 216 Gaps:8 60.34 358 33.33 7e-29 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 2pk2_C 9 224 + 216 Gaps:8 60.34 358 33.33 7e-29 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 2pk2_B 9 224 + 216 Gaps:8 60.34 358 33.33 7e-29 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 2pk2_A 9 224 + 216 Gaps:8 60.34 358 33.33 7e-29 mol:protein length:358 Cyclin-T1 Protein Tat
blastp_pdb 2w2h_B 9 224 + 216 Gaps:8 81.82 264 33.33 9e-29 mol:protein length:264 CYCLIN-T1
blastp_pdb 2w2h_A 9 224 + 216 Gaps:8 81.82 264 33.33 9e-29 mol:protein length:264 CYCLIN-T1
blastp_pdb 3tni_B 9 239 + 231 Gaps:10 89.96 259 31.76 3e-28 mol:protein length:259 Cyclin-T1
blastp_pdb 3tnh_B 9 239 + 231 Gaps:10 89.96 259 31.76 3e-28 mol:protein length:259 Cyclin-T1
blastp_pdb 3mia_B 9 224 + 216 Gaps:8 81.20 266 32.87 4e-28 mol:protein length:266 Cyclin-T1
blastp_uniprot_sprot sp|Q8RWV3|CCL11_ARATH 1 443 + 443 Gaps:31 100.00 416 72.36 0.0 Cyclin-L1-1 OS Arabidopsis thaliana GN CYCL1-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9AS36|CCL11_ORYSJ 1 441 + 441 Gaps:20 99.53 427 65.88 0.0 Cyclin-L1-1 OS Oryza sativa subsp. japonica GN CYCL1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5I0H5|CCNL2_RAT 2 355 + 354 Gaps:30 66.54 520 41.33 7e-71 Cyclin-L2 OS Rattus norvegicus GN Ccnl2 PE 2 SV 2
blastp_uniprot_sprot sp|Q7ZVX0|CCNL1_DANRE 2 241 + 240 Gaps:8 48.19 498 48.75 2e-70 Cyclin-L1 OS Danio rerio GN ccnl1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JJA7|CCNL2_MOUSE 2 241 + 240 Gaps:9 46.53 518 47.72 3e-70 Cyclin-L2 OS Mus musculus GN Ccnl2 PE 2 SV 1
blastp_uniprot_sprot sp|Q96S94|CCNL2_HUMAN 2 241 + 240 Gaps:5 46.35 520 46.89 4e-69 Cyclin-L2 OS Homo sapiens GN CCNL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZJP9|CCNL1_CHICK 2 241 + 240 Gaps:9 45.13 534 46.06 5e-68 Cyclin-L1 OS Gallus gallus GN CCNL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5BKF8|CCNL2_XENTR 2 245 + 244 Gaps:3 49.30 497 46.12 1e-67 Cyclin-L2 OS Xenopus tropicalis GN ccnl2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6GN15|CCNL1_XENLA 2 247 + 246 Gaps:9 49.80 496 46.56 2e-67 Cyclin-L1 OS Xenopus laevis GN ccnl1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9R1Q2|CCNL1_RAT 2 247 + 246 Gaps:9 46.87 527 46.56 3e-65 Cyclin-L1 OS Rattus norvegicus GN Ccnl1 PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 4 147 144 SSF47954 none none IPR013763
SMART 40 143 104 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
SMART 156 238 83 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
Pfam 9 147 139 PF00134 none Cyclin, N-terminal domain IPR006671
PANTHER 2 445 444 PTHR10026:SF13 none none none
PIRSF 1 446 446 PIRSF036580 none none IPR015429
Coils 386 407 22 Coil none none none
SUPERFAMILY 152 252 101 SSF47954 none none IPR013763
PANTHER 2 445 444 PTHR10026 none none IPR015429
Coils 338 359 22 Coil none none none
Gene3D 5 183 179 G3DSA:1.10.472.10 none none IPR013763

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting