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TE_finder
The TE_finder suite gathers C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. But we think that the tools are generic enough to be used in other contexts.The suite is mainly composed by four programs BLASTER, MATCHER, GROUPER, ...

Tedna
Tedna is a lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.Last version: 1.3 Source code in github Changes: Long reads as input are available. Previous versions Version 1.2.2 Source code: ...