Synteny is gene's order conservation between differents species.

Developed by URGI team for J. Salse (INRA Clermont-Ferrand).

Publications:

•   Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes.

Pont, Caroline; Murat, Florent; Guizard, Sebastien; Flores, Raphael; Foucrier, Severine; Bidet, Yannick; Quraishi, Umar Massod; Alaux, Michael; Dolezel, Jaroslav; Fahima, Tzion; Budak, Hikmet; Keller, Beat; Salvi, Silvio; Maccaferri, Marco; Steinbach, Delphine; Feuillet, Catherine; Quesneville, Hadi; Salse, Jerome

Plant J. 2013 Oct 26. doi: 10.1111/tpj.12366

• Shared Sub-genome Dominance Following Polyploidization Explains Grass Genome Evolutionary Plasticity from a 7 Protochromosome Ancestor with 16K Protogenes.

Murat F, Zhang R, Guizard S, Flores R, Armero A, Pont C, Steinbach D, Quesneville H, Cooke R, Salse J.

Genome Biol Evol. 2013 Dec 6.

•   Karyotype and Gene Order Evolution from ReconstructedExtinct Ancestors Highlight Contrasts in Genome Plasticity ofModern Rosid Crops

Florent Murat, Rongzhi R. Zhang, Sébastien Guizard, Haris Gavranovic, Raphael Flores, Delphine Steinbach, Hadi Quesneville, Eric Tannier, Jerôme Salse

Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (3), pp.735-749.  ⟨10.1093/gbe/evv014⟩

•   Reconciling the evolutionary origin of bread wheat (Triticum aestivum)

Moaine El Baidouri, Florent Murat, Maeva Veyssière, Mélanie Molinier, Raphaël-Gauthier Flores, Laura Burlot, Michael Alaux, Hadi Quesneville, Caroline Pont, Jerôme Salse

New Phytologist, Wiley, 2016, 213 (3),  ⟨10.1111/nph.14113⟩

• Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.)

Umar Quraishi, Caroline Pont, Qurat-Ul Ain, Raphaël Flores, Laura Burlot,Michael Alaux, Hadi Quesneville, Jerôme Salse

Frontiers in Plant Science, Frontiers, 2017, 8, pp.1-12.  ⟨10.3389/fpls.2017.01843⟩

You can access a video showing basic features of SyntenyViewer https://www.youtube.com/watch?v=4fR_GPBdiqg

Launch Plant Synteny Viewer:

• https://urgi.versailles.inrae.fr/synteny/synteny/

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