Download
Genomic sequences
- bt4_supctg.fsa.gz (11.34 MB) Botrytis T4 Supercontigs
- bt4_ctg.fsa.gz (11.29 MB) Botrytis T4 contigs (virtual contigs extracted from supercontigs after final assembly they are separated by gap of at least one nucleotide N)
- bt4_ctg_exclus.fsa.gz (667.17 kB) Botrytis T4 excluded contigs (from excluded supercontigs (length < 20Kb or Ns > 10%)
Genes
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BofuT4_orfnucall_1.fsa.gz (5.32 MB)
Botrytis T4 predicted genes:
It contains reliable and unreliable Eugene predicted gene (without UTRs)
BofuT4_Pxxxxxx.1 : gene with length > 300 Nucl OR (gene with length < 300 aa with EST Evidence)
BofuT4_uPxxxxxx.1 : gene with length < 300 aa without EST evidence (at the time of prediction pipeline))
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BofuT4_orfprotall_1.fsa.gz (3.45 MB)
Botrytis T4 predicted protein:
It contains reliable and unreliable Eugene predicted protein
BofuT4_Pxxxxxx.1 : protein with length > 100 aa OR (protein with length < 100 aa with EST Evidence)
BofuT4_uPxxxxxx.1 : protein with length < 100 aa without EST evidence (at the time of prediction pipeline))
- Bot_chips.fsa.gz (6.00 MB) Botrytis T4 (genes and ESTs) and B05.10 (genes) sequences used for Botrytis Nimblegen design
EST (public only)
| Botrytis ESTs Libraries | Nb seqs | Description | |
| T4 | AL* | 6412 | Mycelium, nitrate starvation |
| PD0ABA* | 18701 | Young mycelium | |
| PD0ACA* | 7284 | pH stress | |
| PD0AEA* | 2984 | Appressoria on teflon | |
| PD0AGA* | 6584 | Mycelium - different stresses library | |
| PD0AHA* | 6846 | Appressoria on teflon | |
| PD0ADA* | 4094 | Carbon sources | |
| A1 | BcA1* | 10532 | Mycelium, 4 days in rich medium |
| SAS56 X SAS405 | PD0AFA* | 3450 | Mycelium, 4 days in rich medium |
| Total ESTs | Bot_allest4_public | 66887 | ESTs |
| Total EST contigs | Bot_allest4_clctg_public | 8954 | unisequences mapped on the genome |
- Bot_allest4_public.fsa.gz (12.46 MB)
- Bot_allest4_clctg_public.fsa.gz (2.69 MB)
- Mapping_Botrytis_EST_accession_vs_NCBI_accession.txt (5.67 MB) (mapping between BT4 orignal EST accessions and NCBI released accessions)
Supplementary downloads
- bt4_supctg_ctg.fsa.gff.gz (11.34 MB) Gff file for Botrytis T4 contigs mapping on supercontig
- bt4_ctg_supctg_coordinates.gz (26.59 kB) Botrytis T4 contigs mapping on supercontig
- bt4_ctg_supctg.size.gz (14.98 kB) Botrytis T4 contigs and supercontig size
- BofuT4_orfnucall_1.cusp.gz (1.04 kB) Codon usage table calculated on Botrytis T4 genes (BofuT4_orfallnuc_1.fsa)
- blast2go_botrytis.dat (20.45 MB) Blast2GO project (Gene Ontologie Annotation)
Communications