SNP tools: GnpSnp, GenAlys

• Program: Presentation of SNP tools from CNG and URGI to detect, store and query SNP data
• 14 january 2008 (status = closed)
• Length: 1 day
• Schedule : 10:00 0 17:30
• Location EVRY: Centre national de Genotypage, 2 rue Gaston Cremieux, RDC then INRA URGI, 523 place des terrasses de l'agora, first floor room Saphir (morning)
• room Saphir at the beginning of afternoon for practical courses then at URGI
• Program details: (course in french) matin:
• La plateforme bioinformatique de l'URGI (Delphine Steinbach, INRA URGI), 30 minutes
• Presentation de l'application de gestion des donnees de polymorphisme de sequences GnpSNP, (Fabienne Granier, Institut Jean-Pierre Bourguin INRA Versailles), 30 minutes
• Alignement de sequences avec GenAlys, (Heather MacKhann, INRA EPGV), 30 minutes
• apres-midi:
• Alignement de sequences et mise en evidence des polymorphismes, generation des fichiers de sortie (Aurelie Berard/Pierre Mourmet, CNG)
• Soumission d'un lot de donnees, utilisation de l'outil de soumission sur le web de l'URGI, (Fabienne Granier)
• Navigation dans l'application GnpSNP, (Nacer Mohellibi, INRA URGI)
• Requirements: Bring your labtop to do the practical sessions
• You could bring your own sequences to align but it is not a necessity. You will come back with a CDROM with GenAlys software or the software directly installed on your labtop.
• You need a URGI account : ask urgi-contact [AT] versailles.inra.fr to get one.

Animation: Nacer Mohellii, Delphine Steinbach