Detection and annotation of transposable elements in eukaryote genome

The objectives of this training are:
1. To acquire knowledge on transposable elements
2. To achieve annotation of transposable elements in the genome using REPET pipelines
3. To be autonomous on your own data.

Location: URGI, INRA Versailles

Dates 

June 6-9th, 2017
June 9th, 2017 : you are welcomed to stay at URGI to work on your own data (on demand)

Part 1: REPET-Lite

• Opening presentation on transposable elements
• The REPET pipelines and strategies of repeat annotation
• Galaxy overview and practices
• Launch REPET-Lite on Galaxy

Part 2: Manual curation of transposable elements

• Strategies for manual curation
• Launch curation tools on Galaxy
• Data visualization and analyses

This training is free and dedicated to biologists and/or bioinformaticians (10 pers. max)

Registration and information by mail to: 

nathalie.choisne_at_inra.fr AND olivier.inizan_at_inra.fr