Two training sessions will be held at URGI in October 2013. They are organized in the frame of the URGI platform Plant and Fungi call of proposal

Session 1: October 2013, 14-15 (registration closed)

Session 2: October 2013, 28-29 (registration closed)

Location: INRA Versailles, Bat 18, Route de Saint-Cyr, 78000 Versailles

N. Lapalu, F. Alfama-Depauw, O. Inizan, N. Mohellibi, J. Kreplak and J. Amselem

These training sessions will instruct participants in the use of Galaxy workflows developed at URGI.  All the participants will practice in parallel with the trainer using the same use cases datasets.

1^st day  PM: 01:00 – 05:30 

Galaxy initiation

• Galaxy overview
• Data management
• Data quality
• Mapping
• Workflow designing
• Visualization tools

2^nd day AM: 9:00-12:00

SNP calling, MAPHiTS (Mapping Analysis Pipeline for High-Throughput Sequences)

• SNP calling: principles
• MAPHiTS workflow
• Post-processing tools
• Visualization tools
• Feedback, discussion

12:00 – 13:00 Lunch at INRA-Versailles self-service

2^nd day PM: 13:15-16:00

Differential Expression Analysis (DEA)

• Principles
• DEA workflow
• Visualization tools
• Feedback, discussion