Tedna is a lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.

Last version: 1.3

• Source code in github
• Changes: Long reads as input are available.

Previous versions

• Version 1.2.2
  • Source code: tedna_1.2.2.tar.gz (264.93 kB)
  • Binary: tedna (407.88 kB)
  • Changes:
    • Removed autotools. It never like me.
    • Added a "version" parameter in command line.

• Version 1.2.1
  • Source code:  tedna_1.2.1.tar.gz (154.06 kB)
  • Binary:  tedna (411.84 kB)
  • Changes:
    • Increased default max TE size to 30kb instead of 3kb.
    • Corrected bug when using the "--check" option.

• Version 1.1
  • Source code: tedna_1.2.tar.gz (153.98 kB)
  • Binary:  tedna (407.84 kB)

Documentation: tedna_doc.pdf (181.43 kB)

Supplementary material for the paper
The dataset, together with the copia element, can be downloaded here: copia.tar.bz2 (5.52 MB)

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