GRS - Genome Report System

Sclerotinia sclerotiorum GRS

Functional annotation

SS1G_04841.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_04841	1	571	571	n/a	100.00	571	91.77	0.00	0.0	hexose transporter
	bfu:BC1G_09068	3	566	564	Gaps:4	94.59	592	79.64	4.82	0.0	similar to hexose transporter
	act:ACLA_004130	34	558	525	Gaps:20	91.74	557	49.12	16.24	1e-142	MFS monosaccharide transporter putative
	nfi:NFIA_041000	34	527	494	Gaps:11	87.48	559	50.51	16.56	1e-142	MFS monosaccharide transporter putative
	afm:AFUA_5G01160	34	555	522	Gaps:11	92.49	559	47.97	16.63	1e-142	MFS monosaccharide transporter
	afv:AFLA_101530	34	555	522	Gaps:9	92.16	561	48.94	14.89	1e-140	MFS monosaccharide transporter putative
	ang:An03g02190	1	524	524	Gaps:14	93.19	558	49.23	14.62	1e-140	hypothetical protein
	aor:AO090020000259	34	524	491	Gaps:9	81.68	595	51.03	15.02	1e-140	predicted transporter (major facilitator superfamily)
	pcs:Pc13g12490	12	532	521	Gaps:12	92.02	564	48.75	15.03	1e-139	Pc13g12490
	ure:UREG_02491	14	522	509	Gaps:10	89.86	562	48.91	15.05	1e-139	similar to monosaccharide transporter
blastp_uniprot_sprot	sp\|O74849\|GHT6_SCHPO	42	555	514	Gaps:20	93.83	535	38.05	19.32	7e-99	High-affinity fructose transporter ght6 OS Schizosaccharomyces pombe GN ght6 PE 1 SV 1
	sp\|P78831\|GHT5_SCHPO	44	549	506	Gaps:19	92.86	546	37.67	17.55	5e-94	High-affinity glucose transporter ght5 OS Schizosaccharomyces pombe GN ght5 PE 1 SV 2
	sp\|O74969\|GHT2_SCHPO	44	525	482	Gaps:17	89.83	531	38.16	17.82	2e-93	High-affinity glucose transporter ght2 OS Schizosaccharomyces pombe GN ght2 PE 1 SV 1
	sp\|P32466\|HXT3_YEAST	49	541	493	Gaps:17	85.71	567	39.09	18.93	4e-93	Low-affinity glucose transporter HXT3 OS Saccharomyces cerevisiae GN HXT3 PE 1 SV 1
	sp\|P18631\|RAG1_KLULA	49	546	498	Gaps:19	86.95	567	38.34	20.28	2e-92	Low-affinity glucose transporter OS Kluyveromyces lactis GN RAG1 PE 1 SV 1
	sp\|P23585\|HXT2_YEAST	45	516	472	Gaps:13	86.69	541	39.66	17.27	3e-92	High-affinity glucose transporter HXT2 OS Saccharomyces cerevisiae GN HXT2 PE 1 SV 1
	sp\|P32465\|HXT1_YEAST	3	541	539	Gaps:35	95.09	570	37.08	19.00	3e-92	Low-affinity glucose transporter HXT1 OS Saccharomyces cerevisiae GN HXT1 PE 1 SV 1
	sp\|Q9P3U6\|GHT1_SCHPO	44	531	488	Gaps:12	86.54	557	37.97	17.84	4e-92	High-affinity glucose transporter ght1 OS Schizosaccharomyces pombe GN ght1 PE 1 SV 1
	sp\|Q9P3U7\|GHT8_SCHPO	44	535	492	Gaps:16	90.31	547	36.84	17.61	1e-91	Probable high-affinity hexose transporter ght8 mitochondrial OS Schizosaccharomyces pombe GN ght8 PE 1 SV 1
	sp\|P40886\|HXT8_YEAST	47	522	476	Gaps:14	83.30	569	38.40	17.93	5e-91	Hexose transporter HXT8 OS Saccharomyces cerevisiae GN HXT8 PE 1 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|143864	47	510	464	Gaps:15	100.00	449	40.76	17.59	3e-99	pfam00083 Sugar_tr Sugar (and other) transporter.
	gnl\|CDD\|162084	48	506	459	Gaps:21	93.97	481	34.73	19.91	2e-88	TIGR00879 SP MFS transporter sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083).
	gnl\|CDD\|170237	41	510	470	Gaps:71	97.13	487	28.33	17.34	1e-39	PRK10077 xylE D-xylose transporter XylE Provisional.
	gnl\|CDD\|162097	108	505	398	Gaps:53	72.67	505	20.71	20.16	7e-11	TIGR00898 2A0119 cation transport protein.
	gnl\|CDD\|119392	48	494	447	Gaps:43	99.72	352	21.08	17.09	3e-10	cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..
	gnl\|CDD\|148990	100	454	355	Gaps:54	87.83	345	20.13	18.81	5e-09	pfam07690 MFS_1 Major Facilitator Superfamily.
	gnl\|CDD\|129965	46	507	462	Gaps:106	96.81	502	24.90	14.81	4e-08	TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
rpsblast_kog	gnl\|CDD\|35475	40	516	477	Gaps:19	90.84	513	39.06	19.96	3e-73	KOG0254 KOG0254 KOG0254 Predicted transporter (major facilitator superfamily) [General function prediction only].
	gnl\|CDD\|35789	38	506	469	Gaps:18	95.46	485	26.13	19.22	5e-49	KOG0569 KOG0569 KOG0569 Permease of the major facilitator superfamily [Carbohydrate transport and metabolism].
	gnl\|CDD\|35476	99	505	407	Gaps:32	73.51	521	20.37	18.80	3e-22	KOG0255 KOG0255 KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only].
	gnl\|CDD\|35473	46	507	462	Gaps:72	87.36	538	23.62	14.26	2e-16	KOG0252 KOG0252 KOG0252 Inorganic phosphate transporter [Inorganic ion transport and metabolism].
	gnl\|CDD\|35474	97	503	407	Gaps:70	78.60	528	19.28	15.90	8e-11	KOG0253 KOG0253 KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only].

Other analysis

Functional Gbrowse

Ortholog