GRS - Genome Report System

Sclerotinia sclerotiorum GRS

Functional annotation

SS1G_04717.1

Gene Identifier

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_04717	1	362	362	n/a	100.00	362	100.00	0.00	0.0	hypothetical protein K10842 CDK-activating kinase assembly factor MAT1
	bfu:BC1G_00072	1	356	356	Gaps:1	97.28	367	81.51	9.80	1e-175	hypothetical protein K10842 CDK-activating kinase assembly factor MAT1
	ncr:NCU02587	1	347	347	Gaps:15	98.34	362	44.94	17.98	2e-80	hypothetical protein K10842 CDK-activating kinase assembly factor MAT1
	ang:An04g03810	12	349	338	Gaps:26	92.71	384	43.82	19.66	6e-78	hypothetical protein K10842 CDK-activating kinase assembly factor MAT1
	aor:AO090023000639	12	332	321	Gaps:26	89.68	378	44.25	21.53	7e-76	predicted E3 ubiquitin ligase containing RING finger subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor K10842 CDK-activating kinase assembly factor MAT1
	act:ACLA_048280	12	342	331	Gaps:29	90.58	382	44.51	21.97	1e-75	CDK-activating kinase assembly factor MAT1 K10842 CDK-activating kinase assembly factor MAT1
	afv:AFLA_110530	13	332	320	Gaps:26	88.25	383	43.79	21.60	1e-74	CDK-activating kinase assembly factor MAT1 K10842 CDK-activating kinase assembly factor MAT1
	afm:AFUA_4G08900	12	362	351	Gaps:28	95.78	379	43.25	20.39	1e-72	CDK-activating kinase assembly factor MAT1 K10842 CDK-activating kinase assembly factor MAT1
	pcs:Pc16g07740	12	355	344	Gaps:27	97.03	370	44.01	17.55	4e-72	Pc16g07740 K10842 CDK-activating kinase assembly factor MAT1
	nfi:NFIA_107260	10	356	347	Gaps:28	95.08	386	41.14	20.98	8e-72	CDK-activating kinase assembly factor MAT1 K10842 CDK-activating kinase assembly factor MAT1
blastp_uniprot_sprot	sp\|Q6C7D0\|TFB3_YARLI	13	362	350	Gaps:23	98.55	346	38.12	19.65	3e-61	RNA polymerase II transcription factor B subunit 3 OS Yarrowia lipolytica GN TFB3 PE 3 SV 1
	sp\|Q6FMP4\|TFB3_CANGA	9	328	320	Gaps:10	95.15	330	37.90	23.25	8e-57	RNA polymerase II transcription factor B subunit 3 OS Candida glabrata GN TFB3 PE 3 SV 1
	sp\|Q6CT73\|TFB3_KLULA	9	329	321	Gaps:14	98.43	318	38.34	23.00	7e-55	RNA polymerase II transcription factor B subunit 3 OS Kluyveromyces lactis GN TFB3 PE 3 SV 1
	sp\|Q03290\|TFB3_YEAST	5	328	324	Gaps:11	99.38	321	36.68	23.20	2e-54	RNA polymerase II transcription factor B subunit 3 OS Saccharomyces cerevisiae GN TFB3 PE 1 SV 1
	sp\|Q75D20\|TFB3_ASHGO	9	329	321	Gaps:16	98.43	318	39.62	21.09	9e-54	RNA polymerase II transcription factor B subunit 3 OS Ashbya gossypii GN TFB3 PE 3 SV 1
	sp\|Q6BP96\|TFB3_DEBHA	9	327	319	Gaps:36	97.94	340	34.23	22.22	9e-50	RNA polymerase II transcription factor B subunit 3 OS Debaryomyces hansenii GN TFB3 PE 3 SV 2
	sp\|O94684\|TFB3_SCHPO	12	325	314	Gaps:22	94.34	318	34.33	24.67	9e-42	RNA polymerase II transcription factor B subunit 3 OS Schizosaccharomyces pombe GN pmh1 PE 1 SV 1
	sp\|P51949\|MAT1_MOUSE	12	320	309	Gaps:21	97.73	309	30.13	23.18	1e-30	CDK-activating kinase assembly factor MAT1 OS Mus musculus GN Mnat1 PE 2 SV 2
	sp\|P51948\|MAT1_HUMAN	12	320	309	Gaps:9	97.73	309	28.81	23.18	3e-30	CDK-activating kinase assembly factor MAT1 OS Homo sapiens GN MNAT1 PE 1 SV 1
	sp\|P51951\|MAT1_XENLA	12	320	309	Gaps:11	97.73	309	29.47	19.87	3e-27	CDK-activating kinase assembly factor MAT1 OS Xenopus laevis GN mnat1 PE 2 SV 1
blastp_pdb	1g25_A	12	77	66	Gaps:3	96.92	65	46.03	14.29	6e-11	mol:protein length:65 CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1
rpsblast_cdd	gnl\|CDD\|34817	6	328	323	Gaps:22	99.04	314	31.51	22.19	4e-53	COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication recombination and repair].
	gnl\|CDD\|129661	12	320	309	Gaps:13	97.73	309	29.80	22.19	4e-48	TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
	gnl\|CDD\|115072	65	229	165	Gaps:2	81.50	200	34.97	23.31	8e-28	pfam06391 MAT1 CDK-activating kinase assembly factor MAT1. MAT1 is an assembly/targeting factor for cyclin-dependent kinase-activating kinase (CAK) which interacts with the transcription factor TFIIH. The domain found to the N-terminal side of this domain is a C3HC4 RING finger.
rpsblast_kog	gnl\|CDD\|39004	15	320	306	Gaps:17	98.33	300	31.86	20.68	1e-40	KOG3800 KOG3800 KOG3800 Predicted E3 ubiquitin ligase containing RING finger subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification protein turnover chaperones].

Other analysis

Functional Gbrowse

Ortholog