GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P027690.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ncr:NCU00499	11	348	338	n/a	44.67	629	43.42	20.64	3e-45	hypothetical protein
	bfu:BC1G_07936	23	348	326	n/a	45.53	615	51.79	17.86	1e-41	hypothetical protein
	ssl:SS1G_01411	23	348	326	n/a	44.35	620	50.91	17.45	2e-40	hypothetical protein
	pan:PODANSg4245	18	348	331	n/a	38.57	617	47.90	18.49	4e-37	hypothetical protein
	fgr:FG00515.1	11	337	327	n/a	35.62	598	47.89	15.96	9e-37	hypothetical protein
	ani:AN1536.2	4	340	337	n/a	37.80	627	40.51	21.94	4e-35	hypothetical protein
	ang:An16g07260	4	337	334	n/a	33.96	636	40.28	22.69	1e-31	hypothetical protein
	aor:AO090005000602	11	337	327	n/a	71.25	327	34.76	21.46	2e-29	hypothetical protein
	nfi:NFIA_098200	4	340	337	n/a	29.70	643	37.17	25.65	3e-26	bZIP transcription factor putative
	afm:AFUA_8G05460	4	340	337	n/a	24.47	703	37.79	25.00	5e-25	bZIP transcription factor
blastp_uniprot_sprot	no results
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|113443	199	275	77	Gaps:11	31.88	276	26.14	12.50	0.47	pfam04674 Phi_1 Phosphate-induced protein 1 conserved region. Family of conserved plant proteins. Conserved region identified in a phosphate-induced protein of unknown function.
	gnl\|CDD\|131224	14	78	65	Gaps:4	5.24	1164	19.67	21.31	1.4	TIGR02169 SMC_prok_A SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
	gnl\|CDD\|35161	232	347	116	Gaps:6	9.46	1163	23.64	17.27	2.9	COG5602 SIN3 Histone deacetylase complex SIN3 component [Chromatin structure and dynamics].
	gnl\|CDD\|114817	270	306	37	n/a	12.89	287	35.14	18.92	3.1	pfam06120 Phage_HK97_TLTM Tail length tape measure protein. This family consists of the tail length tape measure protein from bacteriophage HK97 and related sequences from Escherichia coli O157:H7.
	gnl\|CDD\|118664	8	69	62	Gaps:8	9.24	649	33.33	15.00	3.7	pfam10136 SpecificRecomb Site-specific recombinase. Members of this family of bacterial proteins are found in various putative site-specific recombinase transmembrane proteins.
rpsblast_kog	gnl\|CDD\|37270	261	306	46	n/a	5.75	800	30.43	21.74	2.1	KOG2059 KOG2059 KOG2059 Ras GTPase-activating protein [Signal transduction mechanisms].
	gnl\|CDD\|38778	289	354	66	Gaps:6	4.16	1588	24.24	22.73	4.0	KOG3570 KOG3570 KOG3570 MAPK-activating protein DENN [Signal transduction mechanisms].
	gnl\|CDD\|35266	110	187	78	Gaps:8	18.58	452	22.62	15.48	4.9	KOG0043 KOG0043 KOG0043 Uncharacterized conserved protein contains DM10 domain [Function unknown].
	gnl\|CDD\|35858	4	42	39	n/a	5.53	705	23.08	28.21	5.0	KOG0639 KOG0639 KOG0639 Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics].
	gnl\|CDD\|37513	206	292	87	Gaps:10	4.96	1956	15.46	13.40	7.9	KOG2302 KOG2302 KOG2302 T-type voltage-gated Ca2+ channel pore-forming alpha1I subunit [Inorganic ion transport and metabolism Signal transduction mechanisms].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0UUS8	1358926	1360168	644	78.36	56.68	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A7E7Y3	1359035	1360162	620	49.44	58.06	n/a	Putative uncharacterized protein - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
	A6S4J9	1359035	1360162	615	48.18	58.05	n/a	Putative uncharacterized protein - Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea)
	Q7SE74	1359035	1360162	629	42.58	57.87	n/a	Putative uncharacterized protein - Neurospora crassa
	Q2H5W7	1359035	1360132	625	46.15	56.16	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q0CNF5	1359035	1360138	642	39.17	56.07	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	A2R8I4	1359035	1360129	636	40.28	55.82	n/a	Contig An16c0230 complete genome - Aspergillus niger
	Q5BD44	1359035	1360138	627	38.55	57.10	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	A1C486	1359035	1360138	640	38.02	56.72	n/a	BZIP transcription factor putative - Aspergillus clavatus
	Q1DLV5	1359035	1360129	644	37.91	56.52	n/a	Putative uncharacterized protein - Coccidioides immitis
blastx_FNG31_prot	SNU04486.1	1359035	1360168	627	79.26	56.14	n/a	Stagonospora nodorum hypothetical protein translation
	SS1G_01411.1	1359035	1360162	620	49.44	58.06	n/a	sclerotinia_sclerotiorum hypothetical protein translation 621 aa
	BC1G_07936.1	1359035	1360162	615	48.18	58.05	n/a	Botrytis cinerea hypothetical protein translation 616 aa
	NCU00499.2	1359035	1360162	629	42.58	57.87	n/a	Neurospora crassa hypothetical protein translation 630 aa
	CHG05948.1	1359035	1360132	625	46.15	56.16	n/a	Chaetomium globosum hypothetical protein translation 626 aa
	FG00515.1	1359035	1360129	598	46.15	56.52	n/a	fusarium_graminearum hypothetical protein 599 aa
	jgi:Triree:32841	1359035	1360129	591	42.48	57.36	n/a	Trichoderma reesei
	AN1536	1359035	1360138	627	38.55	57.10	n/a	Aspergillus nidulans AN1536.3 conserved hypothetical protein translation 628 aa
	CIMG_08708.2	1359035	1360129	644	37.91	56.52	n/a	Coccidioides immitis hypothetical protein translation 645 aa
	gi:70983642:ref:XP_747348.1:	1359035	1360138	703	37.06	52.20	n/a	Aspergillus fumigatus Af293 bZIP transcription factor
blat_BES	no results
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_04486.2:gb:EAT88246	1358926	1360168	644	78.36	56.68	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	no results
REPET	no results
MUMer_show_coords_lm_WA74	no results