GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P027380.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	mgr:MGG_04400	1	396	396	n/a	100.00	396	96.21	2.02	0.0	similar to translation initiation factor 4A K03257 translation initiation factor eIF-4A
	pan:PODANSg5742	1	396	396	n/a	100.00	396	95.20	2.78	0.0	hypothetical protein K03257 translation initiation factor eIF-4A
	ncr:NCU07420	3	396	394	n/a	99.24	397	95.43	2.54	0.0	eIF4A K03257 translation initiation factor eIF-4A
	bfu:BC1G_00466	2	396	395	n/a	99.25	398	95.70	1.52	0.0	eukaryotic initiation factor 4A K03257 translation initiation factor eIF-4A
	ssl:SS1G_04459	2	396	395	n/a	99.25	398	95.44	1.77	0.0	eukaryotic initiation factor 4A K03257 translation initiation factor eIF-4A
	nfi:NFIA_068980	3	396	394	n/a	98.99	398	92.64	5.08	0.0	eukaryotic translation initiation factor 4 putative K03257 translation initiation factor eIF-4A
	afm:AFUA_3G08160	3	393	391	n/a	96.31	406	92.84	4.86	0.0	eukaryotic translation initiation factor 4 K03257 translation initiation factor eIF-4A
	ang:An02g11680	3	396	394	n/a	98.99	398	91.62	5.08	0.0	hypothetical protein K03257 translation initiation factor eIF-4A
	ani:AN2932.2	12	396	385	n/a	91.45	421	92.99	4.68	0.0	similar to EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (EIF4A) K03257 translation initiation factor eIF-4A
	aor:AO090005001461	12	396	385	n/a	91.45	421	92.99	3.38	0.0	translation initiation factor 4F helicase subunit (eIF-4A) and related helicases K03257 translation initiation factor eIF-4A
blastp_uniprot_sprot	sp\|Q0UU86\|IF4A_PHANO	1	396	396	n/a	100.00	396	99.24	0.00	0.0	ATP-dependent RNA helicase eIF4A OS Phaeosphaeria nodorum GN TIF1 PE 3 SV 1
	sp\|A4QVP2\|IF4A_MAGGR	1	396	396	n/a	100.00	396	96.21	2.02	0.0	ATP-dependent RNA helicase eIF4A OS Magnaporthe grisea GN TIF1 PE 3 SV 1
	sp\|Q2HFP1\|IF4A_CHAGB	3	396	394	n/a	99.24	397	95.43	2.79	0.0	ATP-dependent RNA helicase eIF4A OS Chaetomium globosum GN TIF1 PE 3 SV 1
	sp\|Q7RV88\|IF4A_NEUCR	3	396	394	n/a	99.24	397	95.43	2.54	0.0	ATP-dependent RNA helicase eIF4A OS Neurospora crassa GN tif-1 PE 3 SV 2
	sp\|A6RJ45\|IF4A_BOTFB	2	396	395	n/a	99.25	398	95.70	1.52	0.0	ATP-dependent RNA helicase eIF4A OS Botryotinia fuckeliana (strain B05.10) GN tif1 PE 3 SV 1
	sp\|A7EGL7\|IF4A_SCLS1	2	396	395	n/a	99.25	398	95.44	1.77	0.0	ATP-dependent RNA helicase eIF4A OS Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN tif1 PE 3 SV 1
	sp\|A1CJT5\|IF4A_ASPCL	3	396	394	n/a	98.99	398	93.40	4.06	0.0	ATP-dependent RNA helicase eIF4A OS Aspergillus clavatus GN tif1 PE 3 SV 1
	sp\|A1D7N3\|IF4A_NEOFI	3	396	394	n/a	98.99	398	92.64	5.08	0.0	ATP-dependent RNA helicase eIF4A OS Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN tif1 PE 3 SV 1
	sp\|Q0CXD0\|IF4A_ASPTN	1	396	396	n/a	100.00	396	91.92	5.30	0.0	ATP-dependent RNA helicase eIF4A OS Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN tif1 PE 3 SV 2
	sp\|Q1DQ20\|IF4A_COCIM	3	396	394	n/a	98.99	398	93.15	3.81	0.0	ATP-dependent RNA helicase eIF4A OS Coccidioides immitis GN TIF1 PE 3 SV 1
blastp_pdb	3eiq_D	10	396	387	n/a	93.72	414	78.09	11.08	0.0	mol:protein length:414 Eukaryotic initiation factor 4A-I
	3eiq_A	10	396	387	n/a	93.72	414	78.09	11.08	0.0	mol:protein length:414 Eukaryotic initiation factor 4A-I
	2zu6_F	11	396	386	n/a	99.74	388	78.04	11.11	0.0	mol:protein length:388 Eukaryotic initiation factor 4A-I
	2zu6_D	11	396	386	n/a	99.74	388	78.04	11.11	0.0	mol:protein length:388 Eukaryotic initiation factor 4A-I
	2zu6_C	11	396	386	n/a	99.74	388	78.04	11.11	0.0	mol:protein length:388 Eukaryotic initiation factor 4A-I
	2zu6_A	11	396	386	n/a	99.74	388	78.04	11.11	0.0	mol:protein length:388 Eukaryotic initiation factor 4A-I
	3ex7_H	20	396	377	n/a	91.28	413	71.09	15.92	0.0	mol:protein length:413 Eukaryotic initiation factor 4A-III
	3ex7_C	20	396	377	n/a	91.28	413	71.09	15.92	0.0	mol:protein length:413 Eukaryotic initiation factor 4A-III
	2j0s_A	20	396	377	n/a	91.95	410	71.09	15.92	0.0	mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
	2j0q_B	20	396	377	n/a	91.95	410	71.09	15.92	0.0	mol:protein length:410 ATP-DEPENDENT RNA HELICASE DDX48
rpsblast_cdd	gnl\|CDD\|30859	14	387	374	Gaps:6	74.07	513	43.42	19.47	1e-110	COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication recombination and repair / Transcription / Translation ribosomal structure and biogenesis].
	gnl\|CDD\|138747	21	386	366	Gaps:7	79.52	459	35.62	22.74	2e-87	PRK11776 PRK11776 ATP-dependent RNA helicase DbpA Provisional.
	gnl\|CDD\|28928	25	225	201	Gaps:2	100.00	203	49.75	18.72	9e-76	cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding needed in a variety of cellular processes including splicing ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region..
	gnl\|CDD\|138686	20	396	377	Gaps:2	59.94	629	38.46	19.36	2e-74	PRK11634 PRK11634 ATP-dependent RNA helicase DeaD Provisional.
	gnl\|CDD\|138010	24	388	365	Gaps:7	80.96	457	35.68	21.62	5e-69	PRK10590 PRK10590 ATP-dependent RNA helicase RhlE Provisional.
rpsblast_kog	gnl\|CDD\|35549	4	396	393	Gaps:1	98.50	400	69.80	15.23	1e-167	KOG0328 KOG0328 KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in rRNA maturation DEAD-box superfamily [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|35548	1	396	396	Gaps:5	99.50	397	75.95	9.37	1e-162	KOG0327 KOG0327 KOG0327 Translation initiation factor 4F helicase subunit (eIF-4A) and related helicases [Translation ribosomal structure and biogenesis].
	gnl\|CDD\|35547	25	392	368	Gaps:2	79.74	459	40.71	20.77	7e-94	KOG0326 KOG0326 KOG0326 ATP-dependent RNA helicase [RNA processing and modification].
	gnl\|CDD\|35553	24	388	365	Gaps:16	78.20	477	41.29	22.79	9e-93	KOG0332 KOG0332 KOG0332 ATP-dependent RNA helicase [RNA processing and modification].
	gnl\|CDD\|35552	3	380	378	Gaps:17	74.95	519	35.73	19.54	4e-80	KOG0331 KOG0331 KOG0331 ATP-dependent RNA helicase [RNA processing and modification].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q802C9	1270527	1271757	406	78.24	95.07	n/a	Eukaryotic translation initiation factor 4A isoform 1A - Danio rerio (Zebrafish) (Brachydanio rerio)
	Q4FZL1	1270527	1271757	405	77.72	95.31	n/a	Eif4a1 protein - Mus musculus (Mouse)
	Q6P3V8	1270527	1271757	406	77.72	95.07	n/a	Eukaryotic translation initiation factor 4A1 - Rattus norvegicus (Rat)
	Q5F2A7	1270527	1271757	406	77.72	95.07	n/a	Eukaryotic translation initiation factor 4A1 - Mus musculus (Mouse)
	Q3TGK7	1270527	1271757	406	77.72	95.07	n/a	16 days embryo heart cDNA RIKEN full-length enriched library clone:I920046E13 product:eukaryotic translation initiation factor 4A1 full insert sequence - Mus musculus (Mouse)
	A6M928	1270527	1271757	406	77.72	95.07	n/a	Eukaryotic translation initiation factor 4A isoform 1 - Sus scrofa (Pig)
	A8K7F6	1270527	1271757	406	77.72	95.07	n/a	cDNA FLJ78244 highly similar to Homo sapiens eukaryotic translation initiation factor 4A isoform 1 - Homo sapiens (Human)
	Q3TFG3	1270527	1271757	406	77.46	95.07	n/a	17 days embryo stomach cDNA RIKEN full-length enriched library clone:I920085P22 product:eukaryotic translation initiation factor 4A1 full insert sequence - Mus musculus (Mouse)
	Q7ZU67	1270527	1271757	406	77.20	95.07	n/a	Eukaryotic translation initiation factor 4A isoform 1B - Danio rerio (Zebrafish) (Brachydanio rerio)
	A8E590	1270527	1271757	429	77.20	89.98	n/a	Eif4a1b protein - Danio rerio (Zebrafish) (Brachydanio rerio)
blastx_FNG31_prot	CIMG_07593.2	1270527	1271754	398	94.01	96.48	n/a	Coccidioides immitis conserved hypothetical protein translation 399 aa
	AN2932	1270527	1271754	398	92.97	96.48	n/a	Aspergillus nidulans AN2932.3 eukaryotic initiation factor 4A translation 399 aa
	NCU07420.2	1270527	1271935	426	93.40	96.01	n/a	Neurospora crassa EUKARYOTIC INITIATION FACTOR 4A EIF-4A EIF4A translation 427 aa
	gi:71000162:ref:XP_754798.1:	1270536	1271757	406	93.19	94.09	n/a	Aspergillus fumigatus Af293 eukaryotic translation initiation factor eIF4A
	AO090005001461	1270527	1271760	421	93.01	91.69	n/a	Aspergillus oryzae translation initiation factor 4F helicase subunit eIF-4A and related helicases
	SNU04678.1	1270527	1271537	396	99.41	85.10	n/a	Stagonospora nodorum predicted protein translation
	MGG_04400.5	1270527	1271537	396	96.74	85.10	n/a	magnaporthe_grisea hypothetical protein similar to translation initiation factor 4A translation 397 aa
	BC1G_00466.1	1270527	1271537	398	96.74	84.67	n/a	Botrytis cinerea Eukaryotic initiation factor 4A eIF-4A translation 399 aa
	SS1G_04459.1	1270527	1271537	398	96.44	84.67	n/a	sclerotinia_sclerotiorum Eukaryotic initiation factor 4A eIF4A translation 399 aa
	CHG00963.1	1270527	1271537	397	95.85	84.89	n/a	Chaetomium globosum hypothetical protein translation 398 aa
blat_BES	no results
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_04678.2:gb:EAT88438	1270527	1271757	396	99.22	97.22	n/a	n/a
	gnl:WGS:AAGI:SNOT_11134.2:gb:EAT81633	1270527	1271721	374	72.13	93.05	n/a	n/a
	gnl:WGS:AAGI:SNOT_12185.2:gb:EAT80597	1270548	1271718	498	41.60	72.89	n/a	n/a
	gnl:WGS:AAGI:SNOT_15623.2:gb:EAT76998	1270548	1271718	438	37.53	85.16	n/a	n/a
	gnl:WGS:AAGI:SNOT_01967.2:gb:EAT90179	1270587	1271549	808	35.47	40.47	n/a	n/a
	gnl:WGS:AAGI:SNOT_07902.2:gb:EAT84178	1270554	1271567	546	33.24	62.27	n/a	n/a
	gnl:WGS:AAGI:SNOT_03302.2:gb:EAT90033	1270548	1271540	592	33.04	57.77	n/a	n/a
	gnl:WGS:AAGI:SNOT_03936.2:gb:EAT89141	1270548	1271624	727	29.82	53.51	n/a	n/a
	gnl:WGS:AAGI:SNOT_03958.2:gb:EAT89163	1270548	1271549	623	33.33	56.82	n/a	n/a
	gnl:WGS:AAGI:SNOT_10595.2:gb:EAT81989	1270515	1271730	471	40.72	82.38	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	RS0AAB18YC22FM1	1270761	1271440	679	99.85	100.00	n/a	Lm isolate M1 - mycelia grown for 5 days and 8 hours on oilseed rape juice medium
	RS0AAC25YC24FM1	1270648	1270936	598	82.52	34.45	n/a	Lm isolate M1 - V8 (5 days) and minimal medium (8 hours) mycelial library
	RS0AAB10YH13FM1	1270308	1270606	299	98.66	100.00	n/a	Lm isolate M1 - mycelia grown for 5 days and 8 hours on oilseed rape juice medium
	RS0AAB16YI24FM1	1270256	1270529	274	98.54	100.00	n/a	Lm isolate M1 - mycelia grown for 5 days and 8 hours on oilseed rape juice medium
	RS0AAF12YF01CM1	1270140	1270528	389	99.74	100.00	n/a	Lm isolate JN3 - Conidia germinating in liquid Fries for 48 h (insert 1 to 2kb)
	RS0AAG12YF12CM1	1270482	1271121	640	99.84	100.00	n/a	Lm isolate JN3 - Ungerminated conidia (V8 agar) (insert up to 1kb)
	RS0ABA12YB23CM1	1270195	1270926	732	99.59	100.00	n/a	Lm isolate JN3 - cotyledon-pathogen interaction 13 dpi (insert 0.8 to 1.2kb)
	RS0ABC9YN06CM1	1270109	1270576	468	99.36	100.00	n/a	Lm isolate JN3 - cotyledon-pathogen interaction 13 dpi (insert superior to 2kb)
sim4_lm_allest6_clctg	RS0AAC25YC24FM1	1270648	1270936	598	82.52	34.45	n/a	Lm isolate M1 - V8 (5 days) and minimal medium (8 hours) mycelial library
sim4_lm_allest6_clctg	CL_lm_SuperContig_2_v2_lmctg_0399_v2_003.Contig1_v6	1270068	1271440	1372	100.00	100.00	n/a	n/a
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	A1CJT5	1270527	1271757	398	93.77	96.73	n/a	ATP-dependent RNA helicase eIF4A - Aspergillus clavatus
	Q1DQ20	1270527	1271754	398	94.01	96.48	n/a	ATP-dependent RNA helicase eIF4A - Coccidioides immitis
	A1D7N3	1270527	1271757	398	92.99	96.73	n/a	ATP-dependent RNA helicase eIF4A - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q0CXD0	1270527	1271757	396	91.95	97.22	n/a	ATP-dependent RNA helicase eIF4A - Aspergillus terreus (strain NIH 2624)
	A6R3R5	1270605	1271757	385	94.71	93.25	n/a	ATP-dependent RNA helicase eIF4A - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	Q4WX43	1270536	1271757	406	93.19	94.09	n/a	ATP-dependent RNA helicase eIF4A - Aspergillus fumigatus (Sartorya fumigata)
	Q5B948	1270527	1271775	421	92.07	92.87	n/a	ATP-dependent RNA helicase eIF4A - Emericella nidulans (Aspergillus nidulans)
	Q2UPY3	1270527	1271760	421	93.01	91.69	n/a	ATP-dependent RNA helicase eIF4A - Aspergillus oryzae
	Q0UU86	1270527	1271537	396	99.41	85.10	n/a	ATP-dependent RNA helicase eIF4A - Phaeosphaeria nodorum (Septoria nodorum)
	A4QVP2	1270527	1271537	396	96.74	85.10	n/a	ATP-dependent RNA helicase eIF4A - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
REPET	no results
MUMer_show_coords_lm_WA74	no results