GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P011770.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	ssl:SS1G_03409	417	697	281	n/a	79.94	339	53.51	18.82	7e-93	hypothetical protein
	bfu:BC1G_07844	472	697	226	n/a	80.83	266	59.07	16.74	7e-80	hypothetical protein
	fgr:FG08570.1	423	696	274	n/a	75.79	347	47.53	19.77	4e-76	hypothetical protein
	bfu:BC1G_11419	3	151	149	n/a	79.50	161	84.38	10.16	6e-70	similar to mitochondrial import inner membrane translocase subunit TIM17
	ssl:SS1G_11679	3	151	149	n/a	79.50	161	84.38	10.16	6e-70	hypothetical protein
	pan:PODANSg3291	3	151	149	n/a	83.12	154	82.81	10.16	1e-68	hypothetical protein
	mgr:MGG_04228	3	151	149	n/a	83.12	154	82.03	10.94	3e-68	mitochondrial import inner membrane translocase subunit tim-17
	ncr:NCU05623	3	151	149	n/a	81.94	155	83.46	9.45	5e-68	mitochondrial import inner membrane translocase subunit TIM17
	nfi:NFIA_081050	3	151	149	n/a	83.12	154	82.03	10.94	1e-67	mitochondrial inner membrane translocase subunit (TIM17) putative
	afm:AFUA_2G04270	3	151	149	n/a	83.12	154	82.03	10.94	1e-67	mitochondrial inner membrane translocase subunit (TIM17)
blastp_uniprot_sprot	sp\|P59670\|TIM17_NEUCR	3	151	149	n/a	81.94	155	83.46	9.45	5e-69	Mitochondrial import inner membrane translocase subunit tim-17 OS Neurospora crassa GN tim-17 PE 2 SV 1
	sp\|P87130\|TIM17_SCHPO	4	154	151	n/a	79.27	164	76.92	11.54	6e-64	Mitochondrial import inner membrane translocase subunit tim17 OS Schizosaccharomyces pombe GN tim17 PE 2 SV 1
	sp\|P39515\|TIM17_YEAST	1	157	157	n/a	86.08	158	72.79	11.76	1e-61	Mitochondrial import inner membrane translocase subunit TIM17 OS Saccharomyces cerevisiae GN TIM17 PE 1 SV 1
	sp\|Q9SP35\|TIM17_ARATH	2	159	158	n/a	56.38	243	55.47	12.41	9e-39	Mitochondrial import inner membrane translocase subunit Tim17 OS Arabidopsis thaliana GN TIM17 PE 2 SV 2
	sp\|Q9Z0V7\|TI17B_MOUSE	4	159	156	n/a	76.74	172	54.55	17.42	2e-35	Mitochondrial import inner membrane translocase subunit Tim17-B OS Mus musculus GN Timm17b PE 2 SV 1
	sp\|O60830\|TI17B_HUMAN	4	159	156	n/a	75.00	172	55.81	16.28	3e-35	Mitochondrial import inner membrane translocase subunit Tim17-B OS Homo sapiens GN TIMM17B PE 1 SV 1
	sp\|Q2HJE9\|TI17B_BOVIN	4	159	156	n/a	76.74	172	53.79	17.42	2e-34	Mitochondrial import inner membrane translocase subunit Tim17-B OS Bos taurus GN TIMM17B PE 2 SV 1
	sp\|Q9VNA0\|TI17A_DROME	4	155	152	n/a	72.07	179	54.26	18.60	3e-34	Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS Drosophila melanogaster GN Tim17b1 PE 2 SV 2
	sp\|Q99595\|TI17A_HUMAN	4	153	150	n/a	72.51	171	55.65	16.94	1e-33	Mitochondrial import inner membrane translocase subunit Tim17-A OS Homo sapiens GN TIMM17A PE 1 SV 1
	sp\|Q9Z0V8\|TI17A_MOUSE	4	153	150	n/a	72.51	171	54.84	17.74	2e-33	Mitochondrial import inner membrane translocase subunit Tim17-A OS Mus musculus GN Timm17a PE 2 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|130053	4	157	154	Gaps:21	78.24	170	65.41	15.04	2e-60	TIGR00980 3a0801so1tim17
	gnl\|CDD\|140263	6	153	148	Gaps:21	79.38	160	57.48	13.39	3e-44	PTZ00236 PTZ00236 Tim17 Provisional.
	gnl\|CDD\|113255	470	700	231	Gaps:15	97.78	225	34.55	18.64	4e-44	pfam04479 RTA1 RTA1 like protein. This family is comprised of fungal proteins with multiple transmembrane regions. RTA1 is involved in resistance to 7-aminocholesterol while RTM1 confers resistance to an an unknown toxic chemical in molasses. These proteins may bind to the toxic substance and thus prevent toxicity. They are not thought to be involved in the efflux of xenobiotics.
	gnl\|CDD\|111372	3	153	151	Gaps:23	100.00	132	44.70	15.15	4e-33	pfam02466 Tim17 Tim17/Tim22/Tim23 family. The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17 Tim22 and Tim23.
	gnl\|CDD\|35155	6	157	152	Gaps:29	72.77	191	38.13	7.19	6e-28	COG5596 TIM22 Mitochondrial import inner membrane translocase subunit TIM22 [Posttranslational modification protein turnover chaperones].
rpsblast_kog	gnl\|CDD\|36865	2	159	158	Gaps:21	74.86	183	55.47	16.06	9e-47	KOG1652 KOG1652 KOG1652 Mitochondrial import inner membrane translocase subunit TIM17 [Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|38435	20	144	125	Gaps:27	61.90	168	32.69	11.54	1e-05	KOG3225 KOG3225 KOG3225 Mitochondrial import inner membrane translocase subunit TIM22 [Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|38534	12	153	142	Gaps:28	57.28	206	31.36	12.71	0.003	KOG3324 KOG3324 KOG3324 Mitochondrial import inner membrane translocase subunit TIM23 [Intracellular trafficking secretion and vesicular transport].
	gnl\|CDD\|39907	1201	1284	84	Gaps:4	36.87	217	27.50	12.50	0.095	KOG4709 KOG4709 KOG4709 Uncharacterized conserved protein [Function unknown].
	gnl\|CDD\|39056	309	393	85	Gaps:16	22.30	426	25.26	17.89	0.25	KOG3852 KOG3852 KOG3852 Uncharacterized conserved protein [Function unknown].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	Q0U057	3905267	3906418	445	57.18	86.07	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q0U056	3907442	3908410	349	57.43	86.82	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q1DU87	3907532	3908410	375	54.91	73.33	n/a	Putative uncharacterized protein - Coccidioides immitis
	A7EDL9	3907529	3908422	339	52.84	83.19	n/a	Putative uncharacterized protein - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
	A6QZR1	3907529	3908410	308	53.26	89.61	n/a	Predicted protein - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	A6S5I7	3907529	3908257	266	57.71	85.34	n/a	Putative uncharacterized protein - Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea)
	Q1DVA5	3907544	3908410	279	47.21	96.42	n/a	Putative uncharacterized protein - Coccidioides immitis
	Q8X218	3907544	3908374	264	47.86	97.35	n/a	Parasitic phase-specific protein PSP-1 - Coccidioides posadasii
	Q0CNX7	3907523	3908377	289	44.49	87.89	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	A1D0J5	3907538	3908410	310	44.03	86.45	n/a	RTA1 domain protein putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A7F9M3	3907529	3908425	334	43.64	82.34	n/a	Putative uncharacterized protein - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
	A6SGD8	3910085	3910498	161	78.26	71.43	n/a	Putative uncharacterized protein - Botryotinia fuckeliana (strain B05.10) (Noble rot fungus) (Botrytis cinerea)
	A7F258	3910091	3910498	161	79.65	70.19	n/a	Putative uncharacterized protein - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
	Q6CXS9	3910097	3910734	154	68.21	98.05	n/a	Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis - Kluyveromyces lactis (Yeast) (Candida sphaerica)
	A6ZQI7	3910091	3910734	158	68.63	96.84	n/a	Translocase of the inner membrane - Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)
	A7TGP7	3910088	3910734	160	68.83	96.25	n/a	Putative uncharacterized protein - Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (Kluyveromyces polysporus)
	Q6FQI7	3910097	3910734	161	65.82	98.14	n/a	Similar to sp:P39515 Saccharomyces cerevisiae YJL143w TIM17 - Candida glabrata (Yeast) (Torulopsis glabrata)
	Q75BM3	3910097	3910734	156	66.01	98.08	n/a	ACR248Wp - Ashbya gossypii (Yeast) (Eremothecium gossypii)
	A1DFK4	3910100	3910498	154	77.48	72.08	n/a	Mitochondrial inner membrane translocase subunit - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A2QVP2	3910100	3910498	154	76.58	72.08	n/a	Contig An11c0070 complete genome - Aspergillus niger
	Q59LI2	3910088	3910734	154	65.56	98.05	n/a	Likely mitochondrial import inner membrane translocase - Candida albicans (Yeast)
blastx_FNG31_prot	SNU14909.1	3905267	3906715	457	59.34	99.56	n/a	Stagonospora nodorum hypothetical protein translation
	AN4681	3905438	3906328	479	27.74	60.96	n/a	Aspergillus nidulans AN4681.3 conserved hypothetical protein translation 480 aa
	BC1G_07594.1	3905486	3906268	486	28.35	53.70	n/a	Botrytis cinerea hypothetical protein translation 487 aa
	SNU14910.1	3907442	3908410	355	57.28	87.04	n/a	Stagonospora nodorum hypothetical protein translation
	CIMG_06126.2	3907532	3908410	375	54.91	73.33	n/a	Coccidioides immitis hypothetical protein translation 376 aa
	SS1G_03409.1	3907529	3908422	339	52.84	83.19	n/a	sclerotinia_sclerotiorum hypothetical protein translation 340 aa
	BC1G_07844.1	3907529	3908257	266	57.71	85.34	n/a	Botrytis cinerea hypothetical protein translation 267 aa
	FG08570.1	3907532	3908404	347	46.91	79.25	n/a	fusarium_graminearum hypothetical protein 348 aa
	CIMG_05758.2	3907544	3908410	279	47.21	96.42	n/a	Coccidioides immitis hypothetical protein similar to parasitic phase-specific protein PSP-1 translation 280 aa
	SS1G_14304.1	3907529	3908425	334	43.64	82.34	n/a	sclerotinia_sclerotiorum hypothetical protein translation 335 aa
	gi:50554147:ref:XP_504482.1	3907424	3908458	358	39.31	88.83	n/a	Yarrowia lipolytica hypothetical protein
	gi:70999650:ref:XP_754542.1:	3907547	3908386	299	46.18	83.28	n/a	Aspergillus fumigatus Af293 hypothetical protein Afu3g10770
	BC1G_00707.1	3907523	3908398	301	39.93	89.04	n/a	Botrytis cinerea hypothetical protein translation 302 aa
	gi:19114254:ref:NP_593342.1:	3910085	3910725	164	72.37	92.68	n/a	hypothetical protein SPAC3A12.16c [Schizosaccharomyces pombe 972h-]
	ORFP:Skud_Contig2041.10	3910091	3910734	214	69.28	71.50	n/a	Saccharomyces kudiavzevi YJL143W Contig c2041 16182-16826 reverse complement
	ORFP:11853	3910091	3910734	158	69.28	96.84	n/a	Saccharomyces paradoxus YJL143W Contig c343 50536-51012 reverse complement
	ORFP:11645	3910091	3910734	158	69.28	96.84	n/a	Saccharomyces mikatae YJL143W Contig c831 10348-10824
	ORFP:12478	3910091	3910734	158	68.63	96.84	n/a	Saccharomyces bayanus YJL143W Contig c329 24173-24649
	SS1G_11679.1	3910091	3910498	161	79.65	70.19	n/a	sclerotinia_sclerotiorum hypothetical protein translation 162 aa
	BC1G_11419.1	3910085	3910498	161	78.26	71.43	n/a	Botrytis cinerea hypothetical protein similar to IM17_NEUCR Mitochondrial import inner membrane translocase subunit TIM17 translation 162 aa
	gi:50302649:ref:XP_451260.1	3910097	3910734	154	68.21	98.05	n/a	Kluyveromyces lactis unnamed protein product
	gi:6322318:ref:NP_012392.1	3910091	3910734	158	68.63	96.84	n/a	Saccharomyces cerevisiae Essential constituent of the mitochondrial inner membrane presequence translocase interacts with Pam18p to recruit the presequence translocase-associated motor PAM complex and also required for protein sorting during import Tim17p
	jgi:Triree:43270	3910100	3910498	154	75.89	72.73	n/a	Trichoderma reesei
blat_BES	QS0AAE116ZF01RM1	3907706	3908619	1388	n/a	n/a	n/a	n/a
	QS0AAE150ZD11RM1	3907052	3907709	730	n/a	n/a	n/a	n/a
	QS0AAD31ZD08FM1	3910375	3910749	893	n/a	n/a	n/a	n/a
	QS0AAD40ZA03RM1	3910400	3910760	792	n/a	n/a	n/a	n/a
	QS0AAD39ZB07RM2	3910596	3911341	780	n/a	n/a	n/a	n/a
	QS0AAD54ZC10RM1	3910362	3910760	822	n/a	n/a	n/a	n/a
	QS0AAD20ZE03RM1	3910400	3910760	833	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_14909.2:gb:EAT77761	3905267	3906715	445	60.05	99.55	n/a	n/a
	gnl:WGS:AAGI:SNOT_14910.2:gb:EAT77762	3907442	3908410	349	57.43	86.82	n/a	n/a
	gnl:WGS:AAGI:SNOT_13068.2:gb:EAT79395	3907538	3908398	315	41.44	83.49	n/a	n/a
	gnl:WGS:AAGI:SNOT_09083.2:gb:EAT83275	3907496	3908533	358	37.35	90.50	n/a	n/a
	gnl:WGS:AAGI:SNOT_14107.2:gb:EAT78344	3907538	3908377	293	39.02	83.96	n/a	n/a
	gnl:WGS:AAGI:SNOT_09595.2:gb:EAT82860	3907538	3908428	317	36.10	87.38	n/a	n/a
	gnl:WGS:AAGI:SNOT_13241.2:gb:EAT79568	3910106	3910498	249	72.73	44.18	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	Q08417	3907535	3908380	382	38.03	74.35	n/a	Sphingoid long-chain base transporter RSB1 - Saccharomyces cerevisiae (Baker's yeast)
	O13780	3907484	3908386	324	30.74	87.35	n/a	Uncharacterized protein C17G6.02c - Schizosaccharomyces pombe (Fission yeast)
	P87130	3910085	3910725	164	72.37	92.68	n/a	Mitochondrial import inner membrane translocase subunit tim17 - Schizosaccharomyces pombe (Fission yeast)
	P39515	3910091	3910734	158	68.63	96.84	n/a	Mitochondrial import inner membrane translocase subunit TIM17 - Saccharomyces cerevisiae (Baker's yeast)
	P59670	3910100	3910498	155	75.00	72.26	n/a	Mitochondrial import inner membrane translocase subunit tim-17 - Neurospora crassa
REPET	no results
MUMer_show_coords_lm_WA74	no results