GRS - Genome Report System

Leptosphaeria maculans GRS

Functional annotation

Lema_P000260.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	mgr:MGG_06522	136	603	468	n/a	79.07	578	81.40	10.07	0.0	hypothetical protein K01529
	ncr:NCU09349	132	604	473	n/a	81.66	578	80.93	9.75	0.0	ATP-dependent RNA helicase DDX18 K01529
	fgr:FG04350.1	18	604	587	n/a	92.54	590	73.99	10.26	0.0	hypothetical protein
	yli:YALI0E01782g	16	593	578	n/a	90.08	605	66.42	13.58	0.0	YALI0E01782p
	pan:PODANSg504	132	605	474	n/a	81.55	580	80.97	9.94	0.0	hypothetical protein
	nve:NEMVE_v1g112850	140	612	473	n/a	95.56	495	65.12	18.39	0.0	hypothetical protein K01529
	hmg:100198795	143	583	441	n/a	71.13	620	69.61	16.10	0.0	similar to predicted protein
	ppp:PHYPADRAFT_182770	134	589	456	n/a	92.31	494	66.23	17.32	0.0	hypothetical protein
	hsa:8886	25	599	575	n/a	76.87	670	59.81	20.00	0.0	DDX18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 K01529
	dre:321127	141	585	445	n/a	68.15	653	66.97	17.08	0.0	ddx18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 K01529
blastp_uniprot_sprot	sp\|Q0UR48\|HAS1_PHANO	1	613	613	n/a	100.00	610	89.84	5.57	0.0	ATP-dependent RNA helicase HAS1 OS Phaeosphaeria nodorum GN HAS1 PE 3 SV 1
	sp\|A4R8B5\|HAS1_MAGGR	136	603	468	n/a	79.39	587	81.12	10.30	0.0	ATP-dependent RNA helicase HAS1 OS Magnaporthe grisea GN HAS1 PE 3 SV 2
	sp\|Q7S2N9\|HAS1_NEUCR	132	604	473	n/a	81.66	578	80.93	9.75	0.0	ATP-dependent RNA helicase has-1 OS Neurospora crassa GN has-1 PE 3 SV 1
	sp\|Q4IEK8\|HAS1_GIBZE	18	604	587	n/a	92.54	590	73.99	10.26	0.0	ATP-dependent RNA helicase HAS1 OS Gibberella zeae GN HAS1 PE 3 SV 1
	sp\|Q6C7D2\|HAS1_YARLI	16	593	578	n/a	90.08	605	66.42	13.58	0.0	ATP-dependent RNA helicase HAS1 OS Yarrowia lipolytica GN HAS1 PE 3 SV 1
	sp\|Q2GMX1\|HAS1_CHAGB	10	602	593	n/a	91.64	586	72.81	10.24	0.0	ATP-dependent RNA helicase HAS1 OS Chaetomium globosum GN HAS1 PE 3 SV 1
	sp\|Q9NVP1\|DDX18_HUMAN	25	599	575	n/a	76.87	670	59.81	20.00	0.0	ATP-dependent RNA helicase DDX18 OS Homo sapiens GN DDX18 PE 1 SV 2
	sp\|Q54S03\|DDX18_DICDI	97	602	506	n/a	84.05	602	61.07	16.40	0.0	Probable ATP-dependent RNA helicase ddx18 OS Dictyostelium discoideum GN ddx18 PE 3 SV 1
	sp\|Q5AK59\|HAS1_CANAL	25	589	565	n/a	89.38	565	68.91	13.86	0.0	ATP-dependent RNA helicase HAS1 OS Candida albicans GN HAS1 PE 3 SV 1
	sp\|Q8K363\|DDX18_MOUSE	141	599	459	n/a	69.55	660	62.53	20.70	0.0	ATP-dependent RNA helicase DDX18 OS Mus musculus GN Ddx18 PE 2 SV 1
blastp_pdb	2pl3_A	134	335	202	n/a	85.17	236	51.24	22.39	3e-59	mol:protein length:236 Probable ATP-dependent RNA helicase DDX10
	1s2m_A	116	473	358	n/a	78.25	400	35.46	18.85	2e-46	mol:protein length:400 Putative ATP-dependent RNA helicase DHH1
	2db3_D	136	473	338	n/a	63.13	434	40.88	21.90	8e-46	mol:protein length:434 ATP-dependent RNA helicase vasa
	2db3_C	136	473	338	n/a	63.13	434	40.88	21.90	8e-46	mol:protein length:434 ATP-dependent RNA helicase vasa
	2db3_B	136	473	338	n/a	63.13	434	40.88	21.90	8e-46	mol:protein length:434 ATP-dependent RNA helicase vasa
	2db3_A	136	473	338	n/a	63.13	434	40.88	21.90	8e-46	mol:protein length:434 ATP-dependent RNA helicase vasa
	3ber_A	131	335	205	n/a	70.68	249	47.73	22.73	3e-41	mol:protein length:249 Probable ATP-dependent RNA helicase DDX47
	2i4i_A	136	473	338	n/a	66.19	417	38.41	21.01	8e-41	mol:protein length:417 ATP-dependent RNA helicase DDX3X
	3eiq_D	136	473	338	n/a	65.70	414	37.50	22.43	3e-40	mol:protein length:414 Eukaryotic initiation factor 4A-I
	3eiq_A	136	473	338	n/a	65.70	414	37.50	22.43	3e-40	mol:protein length:414 Eukaryotic initiation factor 4A-I
rpsblast_cdd	gnl\|CDD\|30859	130	612	483	Gaps:22	91.03	513	33.40	19.27	4e-96	COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication recombination and repair / Transcription / Translation ribosomal structure and biogenesis].
	gnl\|CDD\|138747	132	517	386	Gaps:24	82.35	459	34.66	20.11	3e-68	PRK11776 PRK11776 ATP-dependent RNA helicase DbpA Provisional.
	gnl\|CDD\|28928	136	342	207	Gaps:4	100.00	203	47.78	20.20	4e-68	cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding needed in a variety of cellular processes including splicing ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region..
	gnl\|CDD\|138470	134	482	349	Gaps:15	83.45	417	36.21	19.54	7e-64	PRK11192 PRK11192 ATP-dependent RNA helicase SrmB Provisional.
	gnl\|CDD\|140141	121	503	383	Gaps:27	63.79	602	36.72	21.09	4e-61	PTZ00110 PTZ00110 helicase Provisional.
rpsblast_kog	gnl\|CDD\|35563	17	596	580	Gaps:43	99.63	543	57.49	16.08	1e-178	KOG0342 KOG0342 KOG0342 ATP-dependent RNA helicase pitchoune [RNA processing and modification].
	gnl\|CDD\|35564	129	576	448	Gaps:6	59.10	758	45.54	19.64	1e-112	KOG0343 KOG0343 KOG0343 RNA Helicase [RNA processing and modification].
	gnl\|CDD\|35569	22	612	591	Gaps:102	95.34	708	31.26	18.07	1e-101	KOG0348 KOG0348 KOG0348 ATP-dependent RNA helicase [RNA processing and modification].
	gnl\|CDD\|35566	133	576	444	Gaps:12	79.37	567	37.78	21.11	1e-98	KOG0345 KOG0345 KOG0345 ATP-dependent RNA helicase [RNA processing and modification].
	gnl\|CDD\|35551	85	522	438	Gaps:16	89.08	476	35.14	20.99	8e-82	KOG0330 KOG0330 KOG0330 ATP-dependent RNA helicase [RNA processing and modification].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
blastx_uniprot_trembl	A7EXT5	197723	199576	573	71.58	98.25	n/a	Putative uncharacterized protein - Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold) (Whetzelinia sclerotiorum)
	A7TMK1	197957	199516	501	72.77	96.01	n/a	Putative uncharacterized protein - Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (Kluyveromyces polysporus)
	A6ZN06	198059	199555	505	75.97	91.49	n/a	Helicase associated with set1 - Saccharomyces cerevisiae (strain YJM789) (Baker's yeast)
	A8PSZ1	198002	199540	542	69.54	87.82	n/a	Putative uncharacterized protein - Malassezia globosa CBS 7966
	A8NE02	197777	199594	640	59.65	89.06	n/a	Putative uncharacterized protein - Coprinopsis cinerea okayama7_130
	Q6DRL1	197717	199564	653	58.67	87.44	n/a	Myc-regulated DEAD/H box 18 RNA helicase - Danio rerio (Zebrafish) (Brachydanio rerio)
	A7SC22	198074	199570	495	66.09	93.54	n/a	Predicted protein - Nematostella vectensis (Starlet sea anemone)
	Q54S03	197711	199606	602	55.72	98.67	n/a	Putative uncharacterized protein - Dictyostelium discoideum (Slime mold)
	Q4V9K8	197717	199564	653	58.32	87.44	n/a	DEAD - Danio rerio (Zebrafish) (Brachydanio rerio)
	A9S9Q2	198056	199603	494	64.58	97.17	n/a	Predicted protein - Physcomitrella patens subsp. patens
blastx_FNG31_prot	SNU05766.1	197657	199606	610	87.87	100.00	n/a	Stagonospora nodorum hypothetical protein translation
	AO090009000242	197921	199567	531	78.43	96.05	n/a	Aspergillus oryzae ATP-dependent RNA helicase pitchoune
	NCU09349.2	197705	199579	578	71.68	98.96	n/a	Neurospora crassa conserved hypothetical protein translation 579 aa
	AN1949	197663	199570	609	72.80	97.21	n/a	Aspergillus nidulans AN1949.3 hypothetical protein translation 610 aa
	CIMG_00559.2	197657	199570	604	72.62	97.35	n/a	Coccidioides immitis probable ATP-dependent RNA helicase translation 605 aa
	SS1G_10150.1	197723	199576	573	71.58	98.25	n/a	sclerotinia_sclerotiorum hypothetical protein translation 574 aa
	MGG_06522.5	197693	199576	578	71.13	98.27	n/a	magnaporthe_grisea conserved hypothetical protein translation 579 aa
	FG04350.1	197708	199579	590	70.59	97.97	n/a	fusarium_graminearum hypothetical protein 591 aa
	CHG10683.1	197687	199573	586	70.38	97.95	n/a	Chaetomium globosum hypothetical protein translation 587 aa
	gi:70993302:ref:XP_751498.1:	197663	199567	668	71.31	90.27	n/a	Aspergillus fumigatus Af293 ATP-dependent RNA helicase
	SNU05766.1	197657	199606	610	87.87	100.00	n/a	Stagonospora nodorum hypothetical protein translation
	CIMG_00559.2	197657	199570	604	72.62	97.35	n/a	Coccidioides immitis probable ATP-dependent RNA helicase translation 605 aa
blat_BES	QS0AAD68ZC12FM1	197775	198559	1251	n/a	n/a	n/a	n/a
blastx_SN15proteins	gnl:WGS:AAGI:SNOT_05766.2:gb:EAT86830	197657	199606	589	87.95	100.00	n/a	n/a
	gnl:WGS:AAGI:SNOT_07095.2:gb:EAT85746	198062	199549	803	42.61	57.29	n/a	n/a
	gnl:WGS:AAGI:SNOT_07902.2:gb:EAT84178	197693	199174	546	36.72	84.80	n/a	n/a
	gnl:WGS:AAGI:SNOT_01967.2:gb:EAT90179	197756	199150	808	34.39	58.29	n/a	n/a
	gnl:WGS:AAGI:SNOT_06469.2:gb:EAT86300	198038	199489	633	33.33	73.93	n/a	n/a
	gnl:WGS:AAGI:SNOT_09314.2:gb:EAT83506	198062	199156	550	37.77	66.91	n/a	n/a
	gnl:WGS:AAGI:SNOT_03302.2:gb:EAT90033	197678	199135	592	30.20	86.15	n/a	n/a
	gnl:WGS:AAGI:SNOT_11806.2:gb:EAT80850	198020	199198	1091	32.12	35.38	n/a	n/a
	gnl:WGS:AAGI:SNOT_00869.2:gb:EAT92364	198212	199222	598	33.52	60.87	n/a	n/a
	gnl:WGS:AAGI:SNOT_03958.2:gb:EAT89163	198023	199222	623	32.41	63.88	n/a	n/a
	gnl:WGS:AAGI:SNOT_05766.2:gb:EAT86830	197657	199606	589	87.95	100.00	n/a	n/a
RepeatMasker_SR	no results
RepeatMasker_LC	no results
sim4_Lm_allest	no results
sim4_lm_allest6_clctg	no results
sim4_cDNA_BHowlett	no results
blastx_uniprot_sprot	Q0UR48	197657	199606	610	87.87	100.00	n/a	ATP-dependent RNA helicase HAS1 - Phaeosphaeria nodorum (Septoria nodorum)
	Q2UUN6	197663	199567	596	73.06	97.15	n/a	ATP-dependent RNA helicase has1 - Aspergillus oryzae
	A2Q9T6	197663	199570	606	73.01	97.19	n/a	ATP-dependent RNA helicase has1 - Aspergillus niger
	Q7S2N9	197705	199579	578	71.68	98.96	n/a	ATP-dependent RNA helicase has-1 - Neurospora crassa
	Q5BBY1	197663	199570	609	72.80	97.21	n/a	ATP-dependent RNA helicase has1 - Emericella nidulans (Aspergillus nidulans)
	Q1EA54	197657	199570	604	72.62	97.35	n/a	ATP-dependent RNA helicase HAS1 - Coccidioides immitis
	Q4IEK8	197708	199579	590	70.59	97.97	n/a	ATP-dependent RNA helicase HAS1 - Gibberella zeae (Fusarium graminearum)
	Q4WQM4	197663	199567	622	71.31	96.95	n/a	ATP-dependent RNA helicase has1 - Aspergillus fumigatus (Sartorya fumigata)
	A1CW14	197663	199567	622	71.14	96.95	n/a	ATP-dependent RNA helicase has1 - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	A1CIQ5	197663	199567	625	70.30	96.96	n/a	ATP-dependent RNA helicase has1 - Aspergillus clavatus
	Q0UR48	197657	199606	610	87.87	100.00	n/a	ATP-dependent RNA helicase HAS1 - Phaeosphaeria nodorum (Septoria nodorum)
	Q1EA54	197657	199570	604	72.62	97.35	n/a	ATP-dependent RNA helicase HAS1 - Coccidioides immitis
REPET	no results
MUMer_show_coords_lm_WA74	no results