GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P156400.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_11266	1	589	589	n/a	100.00	589	100.00	0.00	0.0	hypothetical protein
	ssl:SS1G_06365	4	569	566	Gaps:2	97.75	577	81.38	8.16	0.0	hypothetical protein
	ssl:SS1G_04196	38	589	552	Gaps:11	92.11	596	60.47	11.66	0.0	hypothetical protein
	mgr:MGG_02876	39	589	551	Gaps:10	91.60	595	52.84	17.06	1e-166	MG02876.4 hypothetical protein
	mgr:MGCH7_ch7g635	39	589	551	Gaps:10	91.60	595	52.84	17.06	1e-166	MGG_ch7g635 hypothetical protein
	pan:PODANSg4018	27	588	562	Gaps:12	92.59	594	51.09	15.27	1e-158	hypothetical protein
	bfu:BC1G_00248	136	589	454	Gaps:8	100.00	448	58.71	14.29	1e-148	hypothetical protein
	ncr:NCU00526	62	588	527	Gaps:12	97.09	549	49.16	15.01	1e-145	similar to laccase
	ang:An18g02690	42	589	548	Gaps:28	84.26	648	51.10	15.93	1e-145	hypothetical protein
	ssl:SS1G_05112	43	589	547	Gaps:33	91.67	600	50.36	16.91	1e-145	laccase precursor
blastp_uniprot_sprot	sp\|Q96WM9\|LAC2_BOTFU	45	589	545	Gaps:50	91.74	581	37.52	16.70	8e-89	Laccase-2 OS Botryotinia fuckeliana GN lcc2 PE 2 SV 1
	sp\|Q12570\|LAC1_BOTFU	45	589	545	Gaps:56	91.80	561	38.45	17.28	8e-87	Laccase-1 OS Botryotinia fuckeliana GN lcc1 PE 2 SV 3
	sp\|P78722\|LAC2_PODAN	52	589	538	Gaps:55	87.12	621	36.97	14.79	1e-79	Laccase-2 OS Podospora anserina GN LAC2 PE 2 SV 1
	sp\|Q03966\|LAC1_CRYPA	60	589	530	Gaps:67	89.85	591	37.10	18.08	4e-76	Laccase OS Cryphonectria parasitica GN LAC-1 PE 3 SV 1
	sp\|Q96UM2\|LAC3_BOTFU	94	548	455	Gaps:45	99.12	454	40.00	16.44	2e-75	Laccase-3 (Fragment) OS Botryotinia fuckeliana GN lcc3 PE 3 SV 1
	sp\|P06811\|LAC1_NEUCR	52	589	538	Gaps:72	86.59	619	36.19	15.86	7e-74	Laccase OS Neurospora crassa GN lacc PE 1 SV 3
	sp\|Q70KY3\|LAC1_MELAO	45	589	545	Gaps:62	87.80	623	34.92	15.54	1e-72	Laccase-1 OS Melanocarpus albomyces GN LAC1 PE 1 SV 1
	sp\|Q12719\|LAC4_TRAVE	69	564	496	Gaps:60	91.15	520	35.44	13.92	2e-56	Laccase-4 OS Trametes versicolor GN LCC4 PE 3 SV 1
	sp\|Q99055\|LAC4_TRAVI	69	564	496	Gaps:60	91.15	520	35.44	13.92	2e-56	Laccase-4 OS Trametes villosa GN LCC4 PE 3 SV 1
	sp\|Q02081\|LAC4_THACU	60	561	502	Gaps:47	92.09	531	33.54	16.77	6e-53	Laccase-4 OS Thanatephorus cucumeris GN LCC4 PE 1 SV 1
blastp_pdb	3fu9_B	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	3fu9_A	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	3fu8_B	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	3fu8_A	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	3fu7_A	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	3fu7_B	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	2q9o_B	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	2q9o_A	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	2ih9_B	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
	2ih9_A	45	589	545	Gaps:62	97.85	559	34.92	15.54	2e-73	mol:protein length:559 Laccase-1
rpsblast_cdd	gnl\|CDD\|166245	65	566	502	Gaps:75	94.69	565	31.40	15.33	3e-58	PLN02604 PLN02604 oxidoreductase.
	gnl\|CDD\|163245	65	567	503	Gaps:58	99.26	541	29.05	14.90	2e-56	TIGR03388 ascorbase L-ascorbate oxidase plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3) also called ascorbase. This family is found in flowering plants and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
	gnl\|CDD\|163246	65	546	482	Gaps:83	94.81	539	28.77	15.85	4e-50	TIGR03389 laccase laccase plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2) often several from a single plant species and additional uncharacterized closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
	gnl\|CDD\|165835	62	563	502	Gaps:67	93.41	577	28.01	16.88	2e-46	PLN02191 PLN02191 L-ascorbate oxidase.
	gnl\|CDD\|32315	93	546	454	Gaps:78	84.70	451	30.10	12.04	1e-41	COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis transport and catabolism].
	gnl\|CDD\|149023	71	189	119	Gaps:5	99.16	119	51.69	7.63	1e-37	pfam07732 Cu-oxidase_3 Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognized by the pfam00394 model.
	gnl\|CDD\|132431	84	546	463	Gaps:74	92.75	538	24.45	15.23	2e-30	TIGR03390 ascorbOXfungal L-ascorbate oxidase fungal type. This model describes a family of fungal ascorbate oxidases within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388) plant laccases and laccase-like proteins (TIGR03389) and related proteins. The member from Acremonium sp. HI-25 is characterized.
	gnl\|CDD\|162383	37	553	517	Gaps:87	65.08	587	32.46	12.30	4e-26	TIGR01480 copper_res_A copper-resistance protein CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
	gnl\|CDD\|149022	451	556	106	Gaps:1	78.68	136	33.64	13.08	8e-26	pfam07731 Cu-oxidase_2 Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognized by the pfam00394 model.
	gnl\|CDD\|165995	68	296	229	Gaps:30	38.66	551	35.68	14.55	1e-25	PLN02354 PLN02354 copper ion binding / oxidoreductase.
rpsblast_kog	gnl\|CDD\|36477	65	563	499	Gaps:88	92.54	563	30.71	12.28	2e-69	KOG1263 KOG1263 KOG1263 Multicopper oxidases [Secondary metabolites biosynthesis transport and catabolism].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	no results
sim4_Bot_allest4_clctg	no results
sim4_Ss_allest	G786P53RG4.T0	124150	142856	817	87.68	77.48	n/a	Ss ESTs grown as mycelia at neutral pH
sim4_Ss_allest	G786P567RC12.T0	124150	142855	756	87.38	83.86	n/a	Ss ESTs grown as mycelia at neutral pH
blastx_uniprot_sprot	Q96WM9	129787	131476	581	38.46	87.26	n/a	Laccase-2 precursor - Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea)
	Q12570	129811	131476	561	39.66	82.71	n/a	Laccase-1 precursor - Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea)
	Q96UM2	129889	131353	454	42.48	92.29	n/a	Laccase-3 - Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea)
	P78722	129787	131476	621	38.17	81.00	n/a	Laccase-2 precursor - Podospora anserina
	Q03966	129787	131476	591	36.59	88.32	n/a	Laccase precursor - Cryphonectria parasitica (Chesnut blight fungus) (Endothia parasitica)
	Q70KY3	129787	131476	623	36.40	76.73	n/a	Laccase-1 precursor - Melanocarpus albomyces
	P06811	129781	130194	619	48.57	22.62	n/a	Laccase precursor - Neurospora crassa
	Q99055	129814	131401	520	36.14	84.62	n/a	Laccase-4 precursor - Trametes villosa (White-rot fungus)
	Q02075	129811	130173	599	48.39	20.70	n/a	Laccase-2 precursor - Thanatephorus cucumeris (Black scurf of potato) (Rhizoctonia solani)
	Q12719	129814	131401	520	36.14	84.62	n/a	Laccase-4 precursor - Trametes versicolor (White-rot fungus) (Coriolus versicolor)
blastx_uniprot_trembl	Q2KFQ0	129784	131476	595	53.98	86.55	n/a	Putative uncharacterized protein - Magnaporthe grisea 70-15
	A4RBJ4	129784	131476	595	53.98	86.55	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	A2RAC6	129784	131476	648	51.98	81.64	n/a	Contig An18c0080 complete genome. - Aspergillus niger
	Q7SDL8	129793	131473	549	49.72	97.09	n/a	Putative uncharacterized protein - Neurospora crassa
	Q50H78	129787	131476	594	54.24	85.35	n/a	Laccase I - Hortaea acidophila
	A2Q7I8	129775	131362	598	50.41	81.61	n/a	Putative frameshift precursor - Aspergillus niger
blastx_FNG30_prot	SS1G_06365.1	129560	131416	577	81.49	97.40	n/a	sclerotinia_sclerotiorum hypothetical protein translation 578 aa
	SS1G_04196.1	129662	131476	596	60.99	91.61	n/a	sclerotinia_sclerotiorum hypothetical protein translation 597 aa
	MGG_02876.5	129784	131476	595	53.98	86.55	n/a	magnaporthe_grisea hypothetical protein translation 596 aa
	jgi:Triree:37731	129662	131380	537	54.33	94.60	n/a	Trichoderma reesei
	NCU00526.2	129793	131473	549	49.72	97.09	n/a	Neurospora crassa hypothetical protein translation 550 aa
	SS1G_05112.1	129787	131476	600	50.94	89.00	n/a	sclerotinia_sclerotiorum laccase precursor translation 601 aa
	CHG06172.1	129662	131473	595	53.05	90.92	n/a	Chaetomium globosum hypothetical protein translation 596 aa
	FG09219.1	129787	131389	496	55.77	96.17	n/a	fusarium_graminearum hypothetical protein similar to laccase 497 aa
	NCU02201.2	129787	131476	588	37.57	86.90	n/a	Neurospora crassa hypothetical protein translation 589 aa
	AN5397	129787	131476	664	37.10	75.90	n/a	Aspergillus nidulans AN5397.3 conserved hypothetical protein translation 665 aa
sim4_B0510_genes	BC1G_11266.1	129551	131479	1770	99.94	100.00	n/a	n/a
sim4_SS_genes	SS1G_06365.1	129578	131422	1734	84.69	68.17	n/a	n/a
sim4_SS_genes	SS1G_06370.1	124150	143288	1080	87.40	94.07	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.88	124651	133414	185713	99.87	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.8	129811	130197	1647494	83.98	n/a	n/a	n/a
	SS_supercontig_1.8	131135	131479	1647494	81.74	n/a	n/a	n/a
	SS_supercontig_1.8	129565	129725	1647494	85.71	n/a	n/a	n/a
	SS_supercontig_1.8	130397	130737	1647494	80.06	n/a	n/a	n/a
	SS_supercontig_1.8	130824	131085	1647494	81.30	n/a	n/a	n/a
blat_oligo	botrytisP00156313	129922	129981	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:23.92 . min_over_threshold:0.35 . percent_hyb_over_threshold:71.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00156314	130172	130279	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:42.44 . min_over_threshold:0.41 . percent_hyb_over_threshold:71.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00156315	130444	130503	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:49.15 . min_over_threshold:0.44 . percent_hyb_over_threshold:71.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00156316	130502	130561	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:53.88 . min_over_threshold:0.45 . percent_hyb_over_threshold:71.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00156317	130584	130643	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:44.78 . min_over_threshold:0.38 . percent_hyb_over_threshold:71.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00156318	130744	130803	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:91.42 . min_over_threshold:0.89 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00156319	130826	130885	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:117.82 . min_over_threshold:0.84 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00156320	131216	131275	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:92.23 . min_over_threshold:0.58 . percent_hyb_over_threshold:89.28 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00156321	131401	131460	60	n/a	n/a	n/a	array_gene:BofuT4_P156400_1 . max_over_threshold:55.76 . min_over_threshold:0.5 . percent_hyb_over_threshold:75 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog