|
|
|
Botrytis cinerea T4 GRS
|
Functional annotation
|
BofuT4_P122000.1
|
Gene Identifier
Located on : bt4_SupSuperContig_8_105_1
| Analysis | Type | ID | RefStart | RefEnd | | egn5_orf | gene | BofuT4_G122000.1 | 237750 | 240099 | | mRNA | BofuT4_T122000.1 | 237750 | 240099 | | polypeptide | BofuT4_P122000.1 | 237750 | 240099 | |
|
|
|
|
|
DbXrefs
| DB | Accession | | DB:GenBank_protein | - | | DB:uniprot | - |
|
|
Domain/Motif (Interproscan results)
| Analysis | Domains | Begin | End | Length | Gene Ontology | Cross Ref | InterPro | | HMMPfam | no results | | HMMSmart | no results | | HMMTigr | no results | | HMMPanther | no results | | superfamily | no results | | coils | no results | | gene3d | no results | | seg | no results | | profilescan | no results | | PRODOM | no results | | FPRINTScan | no results | | patternscan | no results |
---> : Genes sharing the same GOID |
|
Localization / Targeting
| Analysis | Start | End | Length | Location | Reliability class | Signal Peptide CutOff | Mitochondrion CutOff | | targetp | no results |
|
| Analysis | Start | End | Length | | tmhmm | no results | | signalp | no results |
|
|
Predicted function
| Predicted function submitted to Public database (EMBL): | hypothetical protein |
|
|
Blast based analysis
| Analysis | Hit | start | end | length | Note | Hit coverage | Hit length | Hit pident | Hit pcons | eValue | Hit description | | blastp_kegg | bfu:BC1G_07969 | 299 | 719 | 421 | n/a | 81.43 | 517 | 95.72 | 0.24 | 0.0 | hypothetical protein | | ssl:SS1G_06439 | 1 | 719 | 719 | Gaps:8 | 77.20 | 772 | 63.42 | 12.42 | 0.0 | hypothetical protein | | bfu:BC1G_07968 | 1 | 237 | 237 | n/a | 99.16 | 239 | 100.00 | 0.00 | 1e-134 | hypothetical protein | | bfu:BC1G_15826 | 296 | 697 | 402 | Gaps:92 | 63.49 | 545 | 32.95 | 18.21 | 3e-24 | hypothetical protein | | ssl:SS1G_08661 | 237 | 697 | 461 | Gaps:99 | 77.06 | 545 | 28.33 | 20.24 | 6e-24 | hypothetical protein | | pcs:Pc22g25410 | 241 | 696 | 456 | Gaps:75 | 79.68 | 561 | 23.94 | 17.67 | 6e-14 | Pc22g25410 | | nfi:NFIA_021630 | 241 | 696 | 456 | Gaps:85 | 78.75 | 560 | 26.76 | 14.51 | 4e-11 | hypothetical protein | | afv:AFLA_080440 | 241 | 696 | 456 | Gaps:74 | 79.86 | 561 | 23.88 | 14.96 | 2e-10 | MYND domain protein putative | | afm:AFUA_1G03000 | 241 | 696 | 456 | Gaps:104 | 79.35 | 557 | 27.60 | 14.48 | 6e-10 | MYND domain protein | | cim:CIMG_04784 | 374 | 696 | 323 | Gaps:60 | 50.50 | 596 | 25.58 | 21.26 | 2e-09 | hypothetical protein | | blastp_uniprot_sprot | no results | | blastp_pdb | no results | | rpsblast_cdd | no results | | rpsblast_kog | no results |
|
|
Other analysis
| cazy | | no results | | blast2GO | | no results | | EST | | no results |
---> : Genes sharing the same GOID |
|
Functional Gbrowse
|
Structural Gbrowse
|
Genome Mapping at gene locus
| Analysis | Hit name | RefStart | RefEnd | Hit length | Hit identity | Hit coverage | eValue | Hit description | | RepeatMasker_ALL_Repbase | no results | | TRF | no results | | REPET | no results | | sim4_Bot_allest | no results | | sim4_Bot_allest4_clctg | no results | | sim4_Ss_allest | no results | | blastx_uniprot_sprot | no results | | blastx_uniprot_trembl | no results | | blastx_FNG30_prot | SS1G_06439.1 | 237577 | 239376 | 772 | 68.87 | 78.24 | n/a | sclerotinia_sclerotiorum predicted protein translation 773 aa | | SS1G_08661.1 | 237733 | 239091 | 545 | 32.35 | 68.62 | n/a | sclerotinia_sclerotiorum hypothetical protein translation 546 aa | | sim4_B0510_genes | BC1G_07968.1 | 239380 | 240099 | 720 | 99.86 | 100.00 | n/a | n/a | | BC1G_07969.1 | 237577 | 239082 | 1554 | 99.54 | 96.91 | n/a | n/a | | sim4_SS_genes | SS1G_06439.1 | 237779 | 239358 | 2319 | 85.30 | 13.50 | n/a | n/a | | blastn_b0510_supercontig | B0510_supercontig_1.43 | 237577 | 250736 | 262799 | 99.90 | n/a | n/a | n/a | | blastn_SS_supercontig | SS_supercontig_1.8 | 238219 | 238504 | 1647494 | 78.67 | n/a | n/a | n/a | | SS_supercontig_1.8 | 239453 | 239495 | 1647494 | 97.67 | n/a | n/a | n/a | | blat_oligo | botrytisP00130074 | 239207 | 239265 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:1 . min_over_threshold:0.51 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130075 | 239109 | 239168 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:0.74 . min_over_threshold:0.28 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130076 | 238846 | 238905 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:0.85 . min_over_threshold:0.35 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130077 | 238710 | 238769 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:0.96 . min_over_threshold:0.35 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130078 | 238574 | 238633 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:1.17 . min_over_threshold:0.27 . percent_hyb_over_threshold:7.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130079 | 238297 | 238356 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:1.79 . min_over_threshold:0.29 . percent_hyb_over_threshold:7.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130081 | 238221 | 238280 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:1.06 . min_over_threshold:0.31 . percent_hyb_over_threshold:7.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130082 | 238023 | 238082 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:1 . min_over_threshold:0.25 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 | | botrytisP00130083 | 237918 | 237977 | 60 | n/a | n/a | n/a | array_gene:BofuT4_P122000_1 . max_over_threshold:0.82 . min_over_threshold:0.27 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0 |
|
|
Current manual annotation
| Results save in database | | Gene ID | BofuT4_P122000.1 | | Gene Ontology | | | Evidence code | | | Synonyms | |
|
|
Ortholog
|
|
|
Genome Report System - copyright INRA 2011
|