GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P116500.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_09777	1	1021	1021	n/a	100.00	1021	80.02	0.29	0.0	hypothetical protein K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	ssl:SS1G_01880	1	616	616	Gaps:2	97.15	562	79.30	1.83	1e-156	hypothetical protein K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	ncr:NCU02497	43	1006	964	Gaps:24	86.43	1024	37.06	18.53	1e-137	hypothetical protein K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	pan:PODANSg09717	45	1008	964	Gaps:23	82.66	1032	38.22	17.82	1e-137	hypothetical protein K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	mgr:MGG_07728	41	1007	967	Gaps:39	82.04	1086	36.59	18.97	1e-119	MG07728.4 hypothetical protein K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	aor:AO090003000106	58	1011	954	Gaps:64	87.23	979	34.19	15.34	1e-100	predicted regulator of rRNA gene transcription (MYB-binding protein) K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	afv:AFLA_036990	58	1011	954	Gaps:68	86.52	987	34.54	14.99	1e-100	DNA polymerase V putative K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	ang:An11g01950	58	1011	954	Gaps:65	91.26	984	33.18	15.92	1e-100	hypothetical protein K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	cim:CIMG_01141	58	720	663	Gaps:42	69.80	990	33.57	17.08	7e-98	hypothetical protein K02331 DNA polymerase phi subunit [EC:2.7.7.7]
	nfi:NFIA_053840	58	1004	947	Gaps:61	90.86	974	32.32	16.61	6e-97	DNA polymerase V putative K02331 DNA polymerase phi subunit [EC:2.7.7.7]
blastp_uniprot_sprot	sp\|O60094\|DPO5_SCHPO	55	720	666	Gaps:71	69.97	959	28.91	18.93	3e-59	DNA polymerase V OS Schizosaccharomyces pombe GN pol5 PE 1 SV 2
blastp_uniprot_sprot	sp\|P39985\|DPO5_YEAST	60	720	661	Gaps:109	67.91	1022	26.51	19.16	9e-35	DNA polymerase V OS Saccharomyces cerevisiae GN POL5 PE 1 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|113695	96	869	774	Gaps:100	99.74	784	22.89	16.37	1e-45	pfam04931 DNA_pol_phi DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.
	gnl\|CDD\|165424	708	854	147	Gaps:11	20.81	817	48.24	26.47	8e-08	PHA03153 PHA03153 hypothetical protein Provisional.
	gnl\|CDD\|146667	707	822	116	Gaps:1	14.22	809	23.48	21.74	9e-07	pfam04147 Nop14 Nop14-like family. Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.
rpsblast_kog	gnl\|CDD\|37137	1	871	871	Gaps:122	81.58	1129	23.13	17.26	7e-43	KOG1926 KOG1926 KOG1926 Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription].
rpsblast_kog	gnl\|CDD\|37043	721	822	102	Gaps:6	6.33	1516	31.25	22.92	1e-08	KOG1832 KOG1832 KOG1832 HIV-1 Vpr-binding protein [Cell cycle control cell division chromosome partitioning].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	B4BC_116_249_D11	123943	124807	865	99.19	100.00	n/a	B0510 Germinated spores on bean leaves library
	PD0ABA26YG08FM1	124500	125237	738	100.00	100.00	n/a	BT4 young mycelium library
	B1BC_045_037_E10	124848	125690	847	98.35	100.00	n/a	BC ATCC 58025 (G3)
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_330_1_bt4ctg_1622_002.Contig1_v5	123943	125690	1752	98.92	100.00	n/a	all_lib_clone_nr:3
sim4_Ss_allest	no results
blastx_uniprot_sprot	O60094	122651	125549	959	32.43	96.45	n/a	DNA polymerase V - Schizosaccharomyces pombe (Fission yeast)
	P39985	122666	125558	1022	26.97	98.34	n/a	DNA polymerase V - Saccharomyces cerevisiae (Baker's yeast)
	Q6DRL5	124305	125213	1269	28.95	23.96	n/a	Myb-binding protein 1A-like protein - Danio rerio (Zebrafish) (Brachydanio rerio)
	Q9BQG0	124299	125270	1328	33.01	23.04	n/a	Myb-binding protein 1A - Homo sapiens (Human)
blastx_uniprot_trembl	Q2HF58	122489	125600	1016	42.22	100.00	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q7SG67	122489	125600	1024	41.50	100.00	n/a	Predicted protein - Neurospora crassa
	A4QYN6	122501	125600	1086	41.39	92.54	n/a	Putative uncharacterized protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q2UM78	122660	125549	979	38.64	97.55	n/a	Predicted regulator of rRNA gene transcription - Aspergillus oryzae
	A2QVM5	122660	125570	984	37.64	97.46	n/a	Similarity to DNA polymerase V Pol5 -Saccharomyces cerevisiae - Aspergillus niger
	A1CTC1	122660	125549	989	37.76	96.66	n/a	DNA polymerase V putative - Aspergillus clavatus
	Q0CKE3	122654	125549	984	37.92	96.75	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	Q2HF58	122489	125600	1016	42.22	100.00	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	Q7SG67	122489	125600	1024	41.50	100.00	n/a	Predicted protein - Neurospora crassa
blastx_FNG30_prot	SS1G_01880.1	122489	124385	562	93.41	97.15	n/a	sclerotinia_sclerotiorum hypothetical protein translation 563 aa
	CHG01146.1	122489	125600	1016	42.22	100.00	n/a	Chaetomium globosum hypothetical protein translation 1017 aa
	NCU02497.2	122489	125600	1024	41.50	100.00	n/a	Neurospora crassa hypothetical protein translation 1025 aa
	jgi:Triree:32912	122489	125570	1050	40.17	99.81	n/a	Trichoderma reesei
	MGG_07728.5	122501	125600	1086	41.39	92.54	n/a	magnaporthe_grisea hypothetical protein translation 1087 aa
	AO090003000106	122660	125549	979	38.64	97.55	n/a	Aspergillus oryzae predicted regulator of rRNA gene transcription MYB-binding protein
	SS1G_01881.1	124692	125600	305	91.15	100.00	n/a	sclerotinia_sclerotiorum hypothetical protein translation 306 aa
	CIMG_01141.2	122660	125549	990	36.70	96.87	n/a	Coccidioides immitis hypothetical protein translation 991 aa
	gi:70991717:ref:XP_750707.1:	122660	125549	981	36.35	96.74	n/a	Aspergillus fumigatus Af293 DNA polymerase V
	SNU02883.1	122558	125483	1015	32.86	96.55	n/a	Stagonospora nodorum hypothetical protein translation
	SS1G_01880.1	122489	124385	562	93.41	97.15	n/a	sclerotinia_sclerotiorum hypothetical protein translation 563 aa
	CHG01146.1	122489	125600	1016	42.22	100.00	n/a	Chaetomium globosum hypothetical protein translation 1017 aa
	NCU02497.2	122489	125600	1024	41.50	100.00	n/a	Neurospora crassa hypothetical protein translation 1025 aa
	jgi:Triree:32912	122489	125570	1050	40.17	99.81	n/a	Trichoderma reesei
sim4_B0510_genes	BC1G_09777.1	122489	125603	3066	99.09	100.00	n/a	n/a
sim4_SS_genes	SS1G_01880.1	122489	124435	1689	87.35	96.39	n/a	n/a
	SS1G_01881.1	124692	125581	918	85.84	96.95	n/a	n/a
	SS1G_01880.1	122489	124435	1689	87.35	96.39	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.66	121365	125972	237554	98.94	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.2	124383	125566	2719746	84.97	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.2	122406	124353	2719746	86.24	n/a	n/a	n/a
blat_oligo	botrytisP00125737	124170	124229	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:29.18 . min_over_threshold:1.09 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125739	124430	124489	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:23.06 . min_over_threshold:0.85 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125740	124568	124627	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:40.89 . min_over_threshold:1.03 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125741	124970	125029	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:88.4 . min_over_threshold:3.29 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125742	125145	125204	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:55.03 . min_over_threshold:1.35 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125743	125345	125404	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:20.41 . min_over_threshold:0.86 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125744	125410	125469	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:16.31 . min_over_threshold:0.82 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125745	125478	125537	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:33.86 . min_over_threshold:1.43 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00125746	125543	125602	60	n/a	n/a	n/a	array_gene:BofuT4_P116500_1 . max_over_threshold:23.1 . min_over_threshold:1 . percent_hyb_over_threshold:96.42 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog