GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P052060.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_06544	27	136	110	n/a	79.14	139	89.09	0.00	7e-52	hypothetical protein
	afv:AFLA_056500	1	135	135	Gaps:1	99.27	137	67.65	8.82	9e-49	NADH-ubiquinone oxidoreductase subunit B17.2 putative
	afm:AFUA_5G06540	1	135	135	Gaps:3	100.00	138	65.22	10.14	6e-46	NADH-ubiquinone oxidoreductase subunit B17.2 (EC:1.6.5.3) K00329 NADH dehydrogenase [EC:1.6.5.3] K00356 NADH dehydrogenase [EC:1.6.99.3]
	pno:SNOG_09335	1	130	130	Gaps:1	95.62	137	65.65	9.16	2e-44	hypothetical protein K11352 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 12 [EC:1.6.5.3 1.6.99.3]
	ani:AN2260.2	1	135	135	Gaps:11	100.00	146	60.96	4.79	3e-42	hypothetical protein
	act:ACLA_009870	1	135	135	Gaps:21	100.00	154	55.84	10.39	1e-38	NADH-ubiquinone oxidoreductase subunit B17.2 putative
	ang:An17g01110	28	135	108	Gaps:1	77.86	140	65.14	8.26	8e-36	hypothetical protein K00329 NADH dehydrogenase [EC:1.6.5.3] K00356 NADH dehydrogenase [EC:1.6.99.3]
	fgr:FG09005.1	1	135	135	Gaps:2	99.26	136	55.56	8.89	2e-35	hypothetical protein K11352 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 12 [EC:1.6.5.3 1.6.99.3]
	mgr:MGG_07542	1	136	136	n/a	100.00	136	50.00	13.97	2e-34	MG07542.4 hypothetical protein K00329 NADH dehydrogenase [EC:1.6.5.3] K00356 NADH dehydrogenase [EC:1.6.99.3]
	pan:PODANSg8540	1	135	135	Gaps:5	100.00	138	51.45	13.77	1e-33	hypothetical protein K11352 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 12 [EC:1.6.5.3 1.6.99.3]
blastp_uniprot_sprot	sp\|Q54MV7\|NDUAC_DICDI	1	89	89	Gaps:2	64.49	138	38.20	28.09	1e-12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Dictyostelium discoideum GN ndufa12 PE 2 SV 2
	sp\|Q9N2W7\|NDUAC_CAEEL	15	130	116	Gaps:20	79.45	146	31.90	21.55	1e-09	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Caenorhabditis elegans GN Y94H6A.8 PE 2 SV 2
	sp\|Q0MQ86\|NDUAC_GORGO	1	130	130	Gaps:15	95.86	145	28.06	15.11	1e-08	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Gorilla gorilla gorilla GN NDUFA12 PE 2 SV 1
	sp\|O97725\|NDUAC_BOVIN	4	132	129	Gaps:16	95.86	145	28.06	17.99	1e-08	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Bos taurus GN NDUFA12 PE 1 SV 1
	sp\|Q0MQ85\|NDUAC_PONPY	1	130	130	Gaps:15	95.86	145	28.06	15.11	1e-08	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Pongo pygmaeus GN NDUFA12 PE 2 SV 1
	sp\|Q0MQ87\|NDUAC_PANTR	1	130	130	Gaps:15	95.86	145	28.06	15.11	1e-08	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Pan troglodytes GN NDUFA12 PE 2 SV 1
	sp\|Q9UI09\|NDUAC_HUMAN	1	130	130	Gaps:15	95.86	145	28.06	15.11	1e-08	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Homo sapiens GN NDUFA12 PE 1 SV 1
	sp\|Q7TMF3\|NDUAC_MOUSE	15	130	116	Gaps:11	83.45	145	28.10	16.53	4e-08	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Mus musculus GN Ndufa12 PE 1 SV 2
	sp\|Q9M9M9\|NDUAC_ARATH	31	129	99	Gaps:6	63.52	159	28.71	17.82	3e-07	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS Arabidopsis thaliana GN At3g03100 PE 1 SV 1
blastp_pdb	no results
rpsblast_cdd	gnl\|CDD\|147317	32	130	99	Gaps:11	100.00	100	39.00	18.00	1e-26	pfam05071 NDUFA12 NADH ubiquinone oxidoreductase subunit NDUFA12. This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologues. The family also contains a second related eukaryotic protein of unknown function.
	gnl\|CDD\|166373	1	109	109	Gaps:9	67.53	154	37.50	17.31	8e-12	PLN02732 PLN02732 complex I subunit.
	gnl\|CDD\|169262	32	131	100	Gaps:15	80.45	133	29.91	18.69	2e-11	PRK08183 PRK08183 NADH dehydrogenase Validated.
	gnl\|CDD\|33556	35	131	97	Gaps:14	87.29	118	33.01	17.48	2e-07	COG3761 COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit [Energy production and conversion].
rpsblast_kog	gnl\|CDD\|38592	15	130	116	Gaps:7	77.48	151	33.33	21.37	7e-15	KOG3382 KOG3382 KOG3382 NADH:ubiquinone oxidoreductase B17.2 subunit [Energy production and conversion].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	AL116728	159398	159948	266	98.50	100.00	n/a	BT4 Mycelium - nitrate starvation library
	YCJA_582474	159188	159951	421	98.10	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_536226	159149	159954	463	97.62	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCJA_582405	159208	159971	421	98.34	100.00	n/a	Botrytis cinerea HortResearch libraries
sim4_Bot_allest4_clctg	AL116728	159398	159948	266	98.50	100.00	n/a	BT4 Mycelium - nitrate starvation library
sim4_Ss_allest	G781P510RB3.T1	159150	159718	489	89.46	67.89	n/a	Ss ESTs grown as developing sclerotia
	G781P510FB3.T1	159150	159718	489	89.46	67.89	n/a	Ss ESTs grown as developing sclerotia
	G781P561FA9.T0	159150	159718	489	89.46	67.89	n/a	Ss ESTs grown as developing sclerotia
blastx_uniprot_sprot	no results
blastx_uniprot_trembl	Q5BB20	159217	159717	146	70.00	75.34	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
	Q0CAB2	159217	159765	167	64.52	74.25	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	Q4WTY5	159217	159717	138	68.18	79.71	n/a	NADH-ubiquinone oxidoreductase subunit B17.2 putative - Aspergillus fumigatus (Sartorya fumigata)
	A2R9E8	159217	159714	140	67.89	77.86	n/a	Catalytic activity: NADH + ubiquinone NAD+ + ubiquinol. - Aspergillus niger
	A1CZB6	159320	159714	108	70.21	87.04	n/a	NADH-ubiquinone oxidoreductase subunit B17.2 putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q0UFX9	159320	159723	137	70.10	70.80	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A1C9Z6	159217	159723	154	66.67	72.08	n/a	NADH-ubiquinone oxidoreductase subunit B17.2 putative - Aspergillus clavatus
	A6RHC2	159217	159717	135	65.14	80.74	n/a	NADH-ubiquinone oxidoreductase subunit B17.2 - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
blastx_FNG30_prot	AN2260	159217	159717	136	70.00	80.88	n/a	Aspergillus nidulans AN2260.3 hypothetical protein translation 137 aa
	gi:70998514:ref:XP_753979.1:	159217	159717	138	68.18	79.71	n/a	Aspergillus fumigatus Af293 NADH-ubiquinone oxidoreductase subunit B17.2
	SNU09335.1	159320	159723	130	70.10	74.62	n/a	Stagonospora nodorum hypothetical protein translation
sim4_B0510_genes	BC1G_06544.1	159211	160444	420	99.76	100.00	n/a	n/a
sim4_SS_genes	no results
blastn_b0510_supercontig	B0510_supercontig_1.32	155883	159292	331639	99.88	n/a	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.32	159289	165510	331639	99.73	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.1	159631	159776	2777073	84.93	n/a	n/a	n/a
	SS_supercontig_1.1	159521	159580	2777073	96.67	n/a	n/a	n/a
	SS_supercontig_1.1	159423	159478	2777073	94.64	n/a	n/a	n/a
blat_oligo	botrytisP00076133	159854	159962	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:41.53 . min_over_threshold:2.46 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076136	159681	159860	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:98.19 . min_over_threshold:10.19 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076137	159543	159661	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:120.33 . min_over_threshold:20.39 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076138	159438	159554	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:125.63 . min_over_threshold:24.98 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076139	159406	159465	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:118.7 . min_over_threshold:28.66 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076140	159331	159390	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:111.93 . min_over_threshold:21.34 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076141	159221	159338	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:83.12 . min_over_threshold:16.04 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076142	159215	159332	60	n/a	n/a	n/a	array_gene:BofuT4_P052060_1 . max_over_threshold:99.24 . min_over_threshold:22.53 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog