GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P051970.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_06532	1	1121	1121	Gaps:10	100.00	1131	97.52	0.00	0.0	hypothetical protein K01539 sodium/potassium-transporting ATPase subunit alpha [EC:3.6.3.9]
	ssl:SS1G_00628	1	1121	1121	n/a	100.00	1121	88.67	4.82	0.0	hypothetical protein K01539 sodium/potassium-transporting ATPase subunit alpha [EC:3.6.3.9]
	bfu:BC1G_04401	12	1121	1110	Gaps:11	99.73	1102	63.33	14.65	0.0	hypothetical protein K01539 sodium/potassium-transporting ATPase subunit alpha [EC:3.6.3.9]
	afv:AFLA_125660	22	1121	1100	Gaps:20	99.54	1091	60.31	15.75	0.0	H /K ATPase alpha subunit putative
	nfi:NFIA_041430	7	1121	1115	Gaps:29	99.82	1100	59.20	16.39	0.0	H /K ATPase alpha subunit putative
	act:ACLA_004560	27	1121	1095	Gaps:18	98.81	1096	60.30	16.81	0.0	H /K ATPase alpha subunit putative
	aor:AO090038000088	93	1121	1029	Gaps:15	96.66	1049	61.74	15.38	0.0	Na+/K+ ATPase alpha subunit
	pno:SNOG_00706	21	1121	1101	Gaps:54	99.63	1079	59.91	14.70	0.0	hypothetical protein K01539 sodium/potassium-transporting ATPase subunit alpha [EC:3.6.3.9]
	pan:PODANSg8259	21	1121	1101	Gaps:44	99.82	1129	57.14	14.55	0.0	hypothetical protein
	afm:AFUA_5G00730	129	1121	993	Gaps:53	93.22	1047	61.78	15.37	0.0	H /K ATPase alpha subunit (EC:3.6.3.10) K01541 H+/K+-exchanging ATPase [EC:3.6.3.10]
blastp_uniprot_sprot	sp\|Q08DA1\|AT1A1_BOVIN	87	1118	1032	Gaps:96	97.75	1021	36.07	20.44	1e-150	Sodium/potassium-transporting ATPase subunit alpha-1 OS Bos taurus GN ATP1A1 PE 2 SV 1
	sp\|P04074\|AT1A1_SHEEP	87	1118	1032	Gaps:96	97.75	1021	36.07	20.34	1e-150	Sodium/potassium-transporting ATPase subunit alpha-1 OS Ovis aries GN ATP1A1 PE 1 SV 1
	sp\|P05023\|AT1A1_HUMAN	96	1118	1023	Gaps:98	96.68	1023	36.50	19.92	1e-150	Sodium/potassium-transporting ATPase subunit alpha-1 OS Homo sapiens GN ATP1A1 PE 1 SV 1
	sp\|Q64392\|AT12A_CAVPO	63	1115	1053	Gaps:76	99.23	1033	34.63	20.20	1e-149	Potassium-transporting ATPase alpha chain 2 OS Cavia porcellus GN ATP12A PE 2 SV 1
	sp\|P05024\|AT1A1_PIG	87	1118	1032	Gaps:86	97.75	1021	36.27	20.24	1e-149	Sodium/potassium-transporting ATPase subunit alpha-1 OS Sus scrofa GN ATP1A1 PE 1 SV 1
	sp\|Q9N0Z6\|AT1A1_RABIT	96	1118	1023	Gaps:90	96.68	1023	36.10	20.63	1e-149	Sodium/potassium-transporting ATPase subunit alpha-1 OS Oryctolagus cuniculus GN ATP1A1 PE 2 SV 2
	sp\|P18907\|AT1A1_HORSE	90	1118	1029	Gaps:92	97.45	1021	35.98	20.60	1e-149	Sodium/potassium-transporting ATPase subunit alpha-1 OS Equus caballus GN ATP1A1 PE 3 SV 1
	sp\|Q5RDR3\|AT1A1_PONAB	96	1118	1023	Gaps:92	96.68	1023	36.60	20.02	1e-149	Sodium/potassium-transporting ATPase subunit alpha-1 OS Pongo abelii GN ATP1A1 PE 2 SV 1
	sp\|Q8VDN2\|AT1A1_MOUSE	96	1118	1023	Gaps:84	96.68	1023	36.20	20.53	1e-149	Sodium/potassium-transporting ATPase subunit alpha-1 OS Mus musculus GN Atp1a1 PE 1 SV 1
	sp\|P06685\|AT1A1_RAT	96	1118	1023	Gaps:84	96.68	1023	36.20	20.53	1e-148	Sodium/potassium-transporting ATPase subunit alpha-1 OS Rattus norvegicus GN Atp1a1 PE 1 SV 1
blastp_pdb	3kdp_C	92	1118	1027	Gaps:86	99.50	998	36.35	20.14	1e-149	mol:protein length:998 Sodium/potassium-transporting ATPase subunit
	3kdp_A	92	1118	1027	Gaps:86	99.50	998	36.35	20.14	1e-149	mol:protein length:998 Sodium/potassium-transporting ATPase subunit
	3b8e_C	92	1118	1027	Gaps:86	99.50	998	36.35	20.14	1e-149	mol:protein length:998 Sodium/potassium-transporting ATPase subunit
	3b8e_A	92	1118	1027	Gaps:86	99.50	998	36.35	20.14	1e-149	mol:protein length:998 Sodium/potassium-transporting ATPase subunit
	3a3y_A	114	1118	1005	Gaps:87	94.94	1028	36.37	19.47	1e-145	mol:protein length:1028 Na K-ATPase alpha subunit
	2zxe_A	114	1118	1005	Gaps:87	94.94	1028	36.37	19.47	1e-145	mol:protein length:1028 Na K-ATPase alpha subunit
	3ixz_A	114	1115	1002	Gaps:90	94.20	1034	33.16	21.87	1e-131	mol:protein length:1034 Potassium-transporting ATPase alpha
	3nan_A	114	1114	1001	Gaps:125	99.60	994	29.09	20.20	1e-82	mol:protein length:994 SERCA1a
	3nam_A	114	1114	1001	Gaps:125	99.60	994	29.09	20.20	1e-82	mol:protein length:994 SERCA1a
	3nal_A	114	1114	1001	Gaps:125	99.60	994	29.09	20.20	1e-82	mol:protein length:994 SERCA1a
rpsblast_cdd	gnl\|CDD\|130176	92	1118	1027	Gaps:98	99.60	997	36.35	20.24	1e-172	TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter P-type ATPase alpha subunit. Sequences from Blastocladiella emersonii (GP\|6636502 GP\|6636502 and PIR\|T43025) C. elegans (GP\|2315419 GP\|6671808 and PIR\|T31763) and Drosophila melanogaster (GP\|7291424) score below trusted cutoff apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage but most likely calcium pumps.
	gnl\|CDD\|30822	111	1111	1001	Gaps:138	97.82	917	34.00	20.96	1e-150	COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|162209	192	1109	918	Gaps:115	96.73	917	31.68	18.49	1e-116	TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types SERCA and PMR1 the latter of which is modelled by TIGR01522.
	gnl\|CDD\|130585	111	1110	1000	Gaps:199	99.66	884	32.46	20.89	1e-102	TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types SERCA and PMR1 the former of which is modelled by TIGR01116.
	gnl\|CDD\|130580	93	1095	1003	Gaps:176	95.96	941	27.69	18.94	2e-77	TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
	gnl\|CDD\|130586	113	1110	998	Gaps:208	98.77	1053	25.48	17.88	8e-74	TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase fungal-type. The Leishmania sequence (GP\|3192903) which falls between trusted and noise in this model may very well turn out to be an active potassium pump.
	gnl\|CDD\|130587	128	1113	986	Gaps:224	96.66	867	29.24	21.96	2e-71	TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
	gnl\|CDD\|162462	132	1041	910	Gaps:188	97.22	755	28.88	20.57	8e-69	TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants fungi protozoa slime molds and archaea. The best studied representative is from yeast.
	gnl\|CDD\|170493	200	1115	916	Gaps:217	86.24	901	30.63	20.85	3e-66	PRK10517 PRK10517 magnesium-transporting ATPase MgtA Provisional.
	gnl\|CDD\|162389	202	912	711	Gaps:154	100.00	499	37.07	19.64	1e-52	TIGR01494 ATPase_P-type ATPase P-type (transporting) HAD superfamily subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493 TIGR01509 TIGR01549 TIGR01544 and TIGR01545). Based on these classifications the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
rpsblast_kog	gnl\|CDD\|35424	92	1118	1027	Gaps:91	98.53	1019	35.86	21.02	0.0	KOG0203 KOG0203 KOG0203 Na+/K+ ATPase alpha subunit [Inorganic ion transport and metabolism].
	gnl\|CDD\|35423	112	1114	1003	Gaps:127	99.79	972	31.65	18.97	1e-142	KOG0202 KOG0202 KOG0202 Ca2+ transporting ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|35425	12	1119	1108	Gaps:174	97.10	1034	27.29	18.23	1e-98	KOG0204 KOG0204 KOG0204 Calcium transporting ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|35426	95	976	882	Gaps:170	77.71	942	29.64	20.22	2e-65	KOG0205 KOG0205 KOG0205 Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|35429	126	841	716	Gaps:141	63.60	1140	25.93	18.07	1e-48	KOG0208 KOG0208 KOG0208 Cation transport ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|35430	204	851	648	Gaps:86	53.79	1160	24.20	17.79	6e-35	KOG0209 KOG0209 KOG0209 P-type ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|35427	154	1071	918	Gaps:234	88.44	1151	21.41	16.01	1e-31	KOG0206 KOG0206 KOG0206 P-type ATPase [General function prediction only].
	gnl\|CDD\|35431	240	852	613	Gaps:137	61.85	1051	24.31	18.62	5e-26	KOG0210 KOG0210 KOG0210 P-type ATPase [Inorganic ion transport and metabolism].
	gnl\|CDD\|35428	220	939	720	Gaps:36	40.90	951	28.53	19.02	1e-18	KOG0207 KOG0207 KOG0207 Cation transport ATPase [Inorganic ion transport and metabolism].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0AGA11YA12CM1	125580	126356	720	100.00	100.00	n/a	BT4 mycelium - different stresses library
sim4_Bot_allest4_clctg	PD0AGA11YA12CM1	125580	126356	720	100.00	100.00	n/a	BT4 mycelium - different stresses library
sim4_Ss_allest	G787P541RA5.T0	123076	123492	737	84.17	56.58	n/a	Ss ESTs grown as developing apothecia
sim4_Ss_allest	G787P541FA5.T0	123076	123490	735	84.13	56.60	n/a	Ss ESTs grown as developing apothecia
blastx_uniprot_sprot	Q64392	123590	126728	1033	37.53	89.25	n/a	Potassium-transporting ATPase alpha chain 2 - Cavia porcellus (Guinea pig)
	P28774	123590	126731	1004	37.38	91.93	n/a	Sodium/potassium-transporting ATPase subunit alpha-B - Artemia sanfranciscana (Brine shrimp) (Artemia franciscana)
	P54707	123590	126728	1042	35.68	88.48	n/a	Potassium-transporting ATPase alpha chain 2 - Homo sapiens (Human)
	Q13733	123590	126737	1029	36.82	89.21	n/a	Sodium/potassium-transporting ATPase subunit alpha-4 - Homo sapiens (Human)
	P35317	123590	126386	1031	35.94	81.77	n/a	Sodium/potassium-transporting ATPase subunit alpha - Hydra attenuata (Hydra) (Hydra vulgaris)
	Q6RWA9	123590	126737	1014	36.47	91.12	n/a	Sodium/potassium-transporting ATPase subunit alpha - Taenia solium (Pork tapeworm)
	Q9TV52	123590	126728	1094	36.56	82.27	n/a	Potassium-transporting ATPase alpha chain 2 - Oryctolagus cuniculus (Rabbit)
	Q92123	123590	126737	1025	38.07	87.90	n/a	Sodium/potassium-transporting ATPase subunit alpha-1 - Xenopus laevis (African clawed frog)
	P17326	123590	126737	996	36.33	84.84	n/a	Sodium/potassium-transporting ATPase subunit alpha-A - Artemia sanfranciscana (Brine shrimp) (Artemia franciscana)
	Q8VDN2	123590	126737	1023	38.18	88.07	n/a	Sodium/potassium-transporting ATPase subunit alpha-1 precursor - Mus musculus (Mouse)
blastx_uniprot_trembl	Q703F7	123584	126746	960	62.13	99.58	n/a	Putative K P-type ATPase - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	A1C5S4	123097	126746	1096	57.71	98.81	n/a	H /K ATPase alpha subunit putative - Aspergillus clavatus
	Q0V5K8	123560	126746	1079	63.68	86.75	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	A2R2X5	123569	126746	1035	59.49	91.11	n/a	Induction: the mRNA for the alpha 1 isoform of the NKAA1 gene from R. norvegicus - Aspergillus niger
	Q4WDU9	123569	126746	1047	59.66	90.45	n/a	H /K ATPase alpha subunit putative - Aspergillus fumigatus (Sartorya fumigata)
	A1D0P5	123569	126746	1100	58.90	86.27	n/a	H /K ATPase alpha subunit putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4P4C5	123190	126746	1130	46.93	93.72	n/a	Putative uncharacterized protein - Ustilago maydis (Smut fungus)
blastx_FNG30_prot	SS1G_00628.1	123019	126746	1121	86.17	100.00	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1122 aa
	MGG_05445.5	123584	126746	960	62.13	99.58	n/a	magnaporthe_grisea conserved hypothetical protein translation 961 aa
	SNU00706.1	123560	126746	1079	63.68	86.75	n/a	Stagonospora nodorum hypothetical protein translation
	gi:70985520:ref:XP_748266.1:	123569	126746	1047	59.66	90.45	n/a	Aspergillus fumigatus Af293 H /K ATPase subunit alpha
	AO090038000088	123569	126746	1049	62.43	84.75	n/a	Aspergillus oryzae Na+/K+ ATPase alpha subunit
	CHG03663.1	123061	126746	983	54.74	94.40	n/a	Chaetomium globosum hypothetical protein translation 984 aa
	UM05038.1	123190	126746	1130	46.93	93.72	n/a	ustilago_maydis hypothetical protein 1131 aa
	RO3G_10693.1	123193	126746	1099	43.11	97.09	n/a	rhizopus_oryzae hypothetical protein translation 1100 aa
	jgi:Triree:35709	123193	126746	1049	41.34	99.62	n/a	Trichoderma reesei
	gi:70987146:ref:XP_749053.1:	123232	126746	1105	41.03	92.85	n/a	Aspergillus fumigatus Af293 Na/K ATPase subunit alpha 1
	SS1G_00628.1	123019	126746	1121	86.17	100.00	n/a	sclerotinia_sclerotiorum hypothetical protein translation 1122 aa
sim4_B0510_genes	BC1G_06532.1	123019	126749	3396	99.88	100.00	n/a	n/a
sim4_SS_genes	SS1G_00628.1	123076	126697	3366	85.13	90.29	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.32	121869	127687	331639	99.60	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.1	123575	124266	2777073	85.40	n/a	n/a	n/a
	SS_supercontig_1.1	125725	126388	2777073	85.69	n/a	n/a	n/a
	SS_supercontig_1.1	124613	125675	2777073	81.66	n/a	n/a	n/a
	SS_supercontig_1.1	123058	123502	2777073	83.82	n/a	n/a	n/a
	SS_supercontig_1.1	126464	126753	2777073	84.83	n/a	n/a	n/a
	SS_supercontig_1.1	124379	124561	2777073	87.43	n/a	n/a	n/a
	SS_supercontig_1.1	126464	126753	2777073	84.83	n/a	n/a	n/a
blat_oligo	botrytisP00076043	125295	125354	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:28.96 . min_over_threshold:0.55 . percent_hyb_over_threshold:75 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076045	125517	125576	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:65.64 . min_over_threshold:1.43 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076046	125618	125734	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:50.07 . min_over_threshold:1.5 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076047	125805	125864	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:34.49 . min_over_threshold:0.64 . percent_hyb_over_threshold:92.85 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076048	126161	126220	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:69.58 . min_over_threshold:2.44 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076049	126264	126323	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:41.99 . min_over_threshold:1.11 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076050	126272	126331	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:50.3 . min_over_threshold:1.35 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076051	126280	126339	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:39.28 . min_over_threshold:1.31 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00076052	126354	126497	60	n/a	n/a	n/a	array_gene:BofuT4_P051970_1 . max_over_threshold:56.28 . min_over_threshold:2.06 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog