GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P043140.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_01630	1	675	675	n/a	100.00	675	95.41	0.15	0.0	hypothetical protein
	pcs:Pc22g07790	5	673	669	Gaps:11	99.70	670	56.44	14.67	0.0	Pc22g07790
	afv:AFLA_037690	23	674	652	Gaps:9	92.80	708	55.86	16.59	0.0	choline dehydrogenase putative
	aor:AO090003000032	71	674	604	Gaps:7	92.11	659	59.14	17.30	0.0	glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)
	pno:SNOG_08012	44	675	632	Gaps:8	93.12	683	57.39	14.31	0.0	hypothetical protein
	nfi:NFIA_041860	25	664	640	Gaps:9	95.13	678	56.90	13.64	0.0	GMC oxidoreductase putative
	afm:AFUA_5G00630	73	664	592	Gaps:7	87.76	678	60.00	14.96	0.0	choline dehydrogenase (EC:1.1.99.1) K00108 choline dehydrogenase [EC:1.1.99.1]
	fgr:FG03034.1	71	675	605	Gaps:13	89.64	676	57.92	16.01	0.0	hypothetical protein
	ssl:SS1G_11988	71	672	602	Gaps:11	88.94	678	57.38	14.76	0.0	hypothetical protein
	bfu:BC1G_14012	71	672	602	Gaps:9	88.94	678	56.72	14.93	0.0	hypothetical protein
blastp_uniprot_sprot	sp\|Q8NE62\|CHDH_HUMAN	303	669	367	Gaps:53	56.23	594	36.23	15.57	2e-34	Choline dehydrogenase mitochondrial OS Homo sapiens GN CHDH PE 2 SV 2
	sp\|Q8BJ64\|CHDH_MOUSE	303	669	367	Gaps:65	56.04	596	35.93	16.47	1e-33	Choline dehydrogenase mitochondrial OS Mus musculus GN Chdh PE 1 SV 1
	sp\|Q88AE7\|BETA_PSESM	297	669	373	Gaps:57	59.86	568	36.18	15.88	4e-33	Choline dehydrogenase OS Pseudomonas syringae pv. tomato GN betA PE 3 SV 1
	sp\|Q4K4K7\|BETA_PSEF5	297	669	373	Gaps:57	59.96	567	34.41	15.00	2e-32	Choline dehydrogenase OS Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN betA PE 3 SV 1
	sp\|Q6LGH5\|BETA_PHOPR	304	671	368	Gaps:59	58.98	568	34.93	16.42	2e-32	Choline dehydrogenase OS Photobacterium profundum GN betA PE 3 SV 1
	sp\|A6X2G7\|BETA_OCHA4	124	672	549	Gaps:79	86.70	549	29.83	17.44	3e-32	Choline dehydrogenase OS Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN betA PE 3 SV 1
	sp\|Q48CM7\|BETA_PSE14	304	669	366	Gaps:57	58.63	568	36.04	15.92	3e-32	Choline dehydrogenase OS Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN betA PE 3 SV 1
	sp\|Q8G1Z8\|BETA_BRUSU	124	672	549	Gaps:85	86.70	549	30.25	17.44	3e-32	Choline dehydrogenase OS Brucella suis GN betA PE 3 SV 1
	sp\|Q4ZM63\|BETA_PSEU2	304	669	366	Gaps:57	58.63	568	36.04	15.92	4e-32	Choline dehydrogenase OS Pseudomonas syringae pv. syringae (strain B728a) GN betA PE 3 SV 1
	sp\|Q88CW6\|BETA_PSEPK	304	669	366	Gaps:59	58.94	565	36.34	15.02	4e-32	Choline dehydrogenase OS Pseudomonas putida (strain KT2440) GN betA PE 3 SV 1
blastp_pdb	3ljp_B	352	669	318	Gaps:35	53.30	546	31.96	19.59	1e-24	mol:protein length:546 Choline oxidase
	3ljp_A	352	669	318	Gaps:35	53.30	546	31.96	19.59	1e-24	mol:protein length:546 Choline oxidase
	3nne_H	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
	3nne_G	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
	3nne_F	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
	3nne_E	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
	3nne_D	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
	3nne_C	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
	3nne_B	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
	3nne_A	352	669	318	Gaps:35	53.30	546	31.96	19.59	3e-24	mol:protein length:546 Choline oxidase
rpsblast_cdd	gnl\|CDD\|32458	48	673	626	Gaps:114	97.79	542	28.49	15.09	5e-50	COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].
	gnl\|CDD\|162541	49	669	621	Gaps:133	98.87	532	30.80	15.78	4e-45	TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199) sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model Caulobacter crescentus shares sequence homology with choline dehydrogenase yet other genes participating in this enzymatic reaction have not currently been identified.
	gnl\|CDD\|167312	303	669	367	Gaps:35	45.17	549	43.15	18.15	4e-27	PRK02106 PRK02106 choline dehydrogenase Validated.
	gnl\|CDD\|147408	522	665	144	Gaps:10	99.28	139	36.96	16.67	1e-25	pfam05199 GMC_oxred_C GMC oxidoreductase. This domain found associated with pfam00732.
	gnl\|CDD\|166426	318	651	334	Gaps:43	38.75	578	34.38	15.62	1e-14	PLN02785 PLN02785 aldehyde-lyase/mandelonitrile lyase.
rpsblast_kog	gnl\|CDD\|36452	35	672	638	Gaps:121	91.65	623	28.20	14.19	7e-58	KOG1238 KOG1238 KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	PD0ABA12YL07NM1r	705573	706366	794	100.00	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	SCL_bt4_SuperContig_32_1_bt4ctg_0586_bt4ctg_0587.Contig1_v5	705573	706431	1193	99.77	72.00	n/a	all_lib_clone_nr:1
sim4_Ss_allest	no results
blastx_uniprot_sprot	Q985M5	704898	705794	550	34.15	52.18	n/a	Choline dehydrogenase - Rhizobium loti (Mesorhizobium loti)
blastx_uniprot_trembl	Q0D0P7	703777	705803	674	60.46	97.18	n/a	Putative uncharacterized protein - Aspergillus terreus (strain NIH 2624)
	Q2UME4	703825	705806	659	59.81	97.42	n/a	Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase - Aspergillus oryzae
	A2R134	703783	705806	628	60.13	96.66	n/a	Contig An12c0380 complete genome. precursor - Aspergillus niger
	A1D0T8	703792	705806	678	60.00	96.61	n/a	GMC oxidoreductase putative - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WDT9	703795	705806	678	59.48	96.46	n/a	Choline dehydrogenase putative - Aspergillus fumigatus (Sartorya fumigata)
	Q0UJQ2	703798	705809	683	59.15	96.05	n/a	Putative uncharacterized protein - Phaeosphaeria nodorum (Septoria nodorum)
	Q2GZG1	703846	705797	643	52.09	96.73	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
blastx_FNG30_prot	AO090003000032	703825	705806	659	59.81	97.42	n/a	Aspergillus oryzae glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase GMC oxidoreductase family
	gi:70985540:ref:XP_748276.1:	703795	705806	678	59.48	96.46	n/a	Aspergillus fumigatus Af293 choline dehydrogenase
	SNU08012.1	703798	705809	683	59.15	96.05	n/a	Stagonospora nodorum hypothetical protein translation
	FG03034.1	703843	705809	676	58.04	93.79	n/a	fusarium_graminearum hypothetical protein 677 aa
	SS1G_11988.1	703822	705800	678	57.61	93.95	n/a	sclerotinia_sclerotiorum hypothetical protein translation 679 aa
	CHG05085.1	703846	705797	643	52.09	96.73	n/a	Chaetomium globosum hypothetical protein translation 644 aa
	FG11008.1	703825	705800	641	50.89	96.88	n/a	fusarium_graminearum hypothetical protein 642 aa
	AO090120000309	703846	705800	646	53.92	96.75	n/a	Aspergillus oryzae choline dehydrogenase and related flavoproteins
	AN7832	703816	705809	648	53.54	97.99	n/a	Aspergillus nidulans AN7832.3 conserved hypothetical protein translation 649 aa
	SNU10365.1	703798	705809	642	51.49	99.22	n/a	Stagonospora nodorum hypothetical protein translation
sim4_B0510_genes	BC1G_01630.1	703665	705812	2028	99.80	100.00	n/a	n/a
sim4_SS_genes	no results
blastn_b0510_supercontig	B0510_supercontig_1.4	702930	706427	810338	99.83	n/a	n/a	n/a
blastn_SS_supercontig	no results
blat_oligo	botrytisP00069321	704322	704381	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:4.32 . min_over_threshold:0.58 . percent_hyb_over_threshold:78.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00069322	704409	704468	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:2.61 . min_over_threshold:0.42 . percent_hyb_over_threshold:57.14 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00069323	704504	704563	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:3.89 . min_over_threshold:0.54 . percent_hyb_over_threshold:78.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00069324	704671	704730	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:3.15 . min_over_threshold:0.47 . percent_hyb_over_threshold:60.71 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00069325	704899	704958	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:2.3 . min_over_threshold:0.64 . percent_hyb_over_threshold:64.28 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:1
	botrytisP00069326	705010	705069	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:1.07 . min_over_threshold:0.34 . percent_hyb_over_threshold:3.57 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00069327	705128	705187	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:1.26 . min_over_threshold:0.32 . percent_hyb_over_threshold:14.28 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00069329	705269	705328	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:3.91 . min_over_threshold:0.59 . percent_hyb_over_threshold:89.28 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00069330	705511	705570	60	n/a	n/a	n/a	array_gene:BofuT4_P043140_1 . max_over_threshold:1.58 . min_over_threshold:0.5 . percent_hyb_over_threshold:35.71 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00205715	705803	705862	60	n/a	n/a	n/a	array_gene:SCL_bt4_SuperContig_32_1_bt4ctg_0586_bt4ctg_0587_Contig1_v5 . max_over_threshold:0.66 . min_over_threshold:0.25 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00205716	705794	705853	60	n/a	n/a	n/a	array_gene:SCL_bt4_SuperContig_32_1_bt4ctg_0586_bt4ctg_0587_Contig1_v5 . max_over_threshold:0.62 . min_over_threshold:0.25 . percent_hyb_over_threshold:0 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog