GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4_P017590.1

Gene Identifier

DbXrefs

Domain/Motif (Interproscan results)

Localization / Targeting

Predicted function

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_06095	1	471	471	n/a	100.00	471	100.00	0.00	0.0	hypothetical protein K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	ssl:SS1G_00194	1	471	471	Gaps:3	100.00	470	92.13	4.47	0.0	hypothetical protein K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	nfi:NFIA_037560	17	471	455	Gaps:2	96.82	472	78.56	9.63	0.0	D-3-phosphoglycerate dehydrogenase K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	pan:PODANSg8350	1	471	471	Gaps:3	100.00	468	76.92	11.32	0.0	hypothetical protein K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	afm:AFUA_5G05500	17	471	455	Gaps:2	96.82	472	77.90	10.07	0.0	D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95) K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	act:ACLA_008800	1	471	471	Gaps:7	100.00	474	76.16	10.13	0.0	D-3-phosphoglycerate dehydrogenase K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	ang:An17g02330	2	461	460	Gaps:2	96.25	480	77.27	9.52	0.0	hypothetical protein K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	afv:AFLA_048020	19	462	444	Gaps:3	90.67	493	79.42	8.95	0.0	D-3-phosphoglycerate dehydrogenase K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	ure:UREG_04045	2	462	461	Gaps:4	95.09	489	75.70	9.89	0.0	D-3-phosphoglycerate dehydrogenase 1 K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
	cim:CIMG_06353	2	471	470	Gaps:10	99.57	470	74.36	12.61	0.0	hypothetical protein K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
blastp_uniprot_sprot	sp\|P40054\|SERA_YEAST	13	471	459	Gaps:2	98.29	469	63.56	15.18	1e-175	D-3-phosphoglycerate dehydrogenase 1 OS Saccharomyces cerevisiae GN SER3 PE 1 SV 1
	sp\|P40510\|SER33_YEAST	9	471	463	Gaps:2	99.15	469	62.15	15.70	1e-173	D-3-phosphoglycerate dehydrogenase 2 OS Saccharomyces cerevisiae GN SER33 PE 1 SV 1
	sp\|P87228\|SERA_SCHPO	33	471	439	Gaps:7	95.71	466	63.23	16.37	1e-166	Putative D-3-phosphoglycerate dehydrogenase OS Schizosaccharomyces pombe GN SPCC364.07 PE 1 SV 1
	sp\|Q54UH8\|SERA_DICDI	57	471	415	Gaps:14	98.53	407	55.86	17.96	1e-127	D-3-phosphoglycerate dehydrogenase OS Dictyostelium discoideum GN serA PE 1 SV 1
	sp\|P43885\|SERA_HAEIN	57	471	415	Gaps:17	98.54	410	49.50	18.32	1e-106	D-3-phosphoglycerate dehydrogenase OS Haemophilus influenzae GN serA PE 3 SV 1
	sp\|P0A9T3\|SERA_SHIFL	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-102	D-3-phosphoglycerate dehydrogenase OS Shigella flexneri GN serA PE 3 SV 2
	sp\|P0A9T0\|SERA_ECOLI	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-102	D-3-phosphoglycerate dehydrogenase OS Escherichia coli (strain K12) GN serA PE 1 SV 2
	sp\|P0A9T1\|SERA_ECOL6	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-102	D-3-phosphoglycerate dehydrogenase OS Escherichia coli O6 GN serA PE 3 SV 2
	sp\|P0A9T2\|SERA_ECO57	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-102	D-3-phosphoglycerate dehydrogenase OS Escherichia coli O157:H7 GN serA PE 3 SV 2
	sp\|Q58424\|SERA_METJA	62	387	326	Gaps:23	60.11	524	39.68	20.95	8e-52	D-3-phosphoglycerate dehydrogenase OS Methanocaldococcus jannaschii GN serA PE 3 SV 1
blastp_pdb	1yba_D	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-103	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
	1yba_C	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-103	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
	1yba_B	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-103	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
	1yba_A	57	471	415	Gaps:16	98.78	410	48.64	19.51	1e-103	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
	1psd_B	57	471	415	Gaps:16	99.02	409	48.64	19.51	1e-103	mol:protein length:409 D-3-PHOSPHOGLYCERATE DEHYDROGENASE (PHOSPHOGL
	1psd_A	57	471	415	Gaps:16	99.02	409	48.64	19.51	1e-103	mol:protein length:409 D-3-PHOSPHOGLYCERATE DEHYDROGENASE (PHOSPHOGL
	2p9g_B	57	471	415	Gaps:16	98.78	410	47.65	20.00	1e-101	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
	2p9g_A	57	471	415	Gaps:16	98.78	410	47.65	20.00	1e-101	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
	2pa3_A	57	471	415	Gaps:16	98.78	410	48.15	19.51	1e-101	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
	2p9e_D	57	471	415	Gaps:16	98.78	410	48.15	19.51	1e-101	mol:protein length:410 D-3-phosphoglycerate dehydrogenase
rpsblast_cdd	gnl\|CDD\|171286	56	471	416	Gaps:17	99.02	409	50.86	18.27	1e-169	PRK11790 PRK11790 D-3-phosphoglycerate dehydrogenase Provisional.
	gnl\|CDD\|30460	62	392	331	Gaps:17	98.77	324	39.69	17.19	6e-82	COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism].
	gnl\|CDD\|172150	63	385	323	Gaps:23	59.43	525	41.67	19.23	2e-80	PRK13581 PRK13581 D-3-phosphoglycerate dehydrogenase Provisional.
	gnl\|CDD\|144107	64	383	320	Gaps:19	100.00	313	32.91	17.25	4e-72	pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
	gnl\|CDD\|162302	63	385	323	Gaps:18	59.62	525	38.66	19.49	7e-70	TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase the serA gene of one pathway of serine biosynthesis. Shorter forms scoring between trusted and noise cutoff include SerA from E. coli.
	gnl\|CDD\|31252	93	383	291	Gaps:16	89.20	324	36.33	19.38	3e-64	COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only].
	gnl\|CDD\|145796	167	351	185	Gaps:15	100.00	176	41.48	18.18	2e-48	pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase NAD binding domain. This domain is inserted into the catalytic domain the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
	gnl\|CDD\|168576	90	362	273	Gaps:21	83.91	317	36.84	16.17	1e-42	PRK06487 PRK06487 glycerate dehydrogenase Provisional.
	gnl\|CDD\|171921	63	390	328	Gaps:30	97.90	333	30.98	22.09	5e-41	PRK13243 PRK13243 glyoxylate reductase Reviewed.
	gnl\|CDD\|168735	90	357	268	Gaps:19	83.76	314	34.60	17.87	4e-36	PRK06932 PRK06932 glycerate dehydrogenase Provisional.
rpsblast_kog	gnl\|CDD\|35291	57	471	415	Gaps:17	100.00	406	47.54	16.26	1e-117	KOG0068 KOG0068 KOG0068 D-3-phosphoglycerate dehydrogenase D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism].
	gnl\|CDD\|35292	75	384	310	Gaps:22	91.67	336	30.84	18.51	9e-42	KOG0069 KOG0069 KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion].
	gnl\|CDD\|35290	114	338	225	Gaps:11	54.25	435	28.39	18.64	1e-14	KOG0067 KOG0067 KOG0067 Transcription factor CtBP [Transcription].

Other analysis

Functional Gbrowse

Structural Gbrowse

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCGA_532747	523053	523684	578	99.65	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCHA_544243	523362	524057	587	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_567217	523858	524249	338	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCOA_553528	523285	523872	533	99.62	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_539418	523413	523683	216	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	PD0ABA12YD16FM1	523138	523857	665	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA7YN21FM1	523334	524153	711	99.86	100.00	n/a	BT4 young mycelium library
	PD0AEA1YF17CM1	523103	523794	637	99.84	100.00	n/a	BT4 appressoria on teflon library
	B3BC_116_202_B09	522367	523371	802	99.50	100.00	n/a	B0510 Germinated spores on hydrophobic surfaces library
	AL112072	522414	522645	183	100.00	100.00	n/a	BT4 Mycelium - nitrate starvation library
	PD0ABA10YE04NM1r	522313	523321	809	99.63	100.00	n/a	BT4 young mycelium library
	PD0ABA7YN21NM1r	522317	523295	779	99.87	100.00	n/a	BT4 young mycelium library
	PD0ABA12YD16NM1r	522327	523289	762	99.74	100.00	n/a	BT4 young mycelium library
	PD0ACA16YM08FM1	522280	522676	348	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0AHA4YH13CM1	522497	523306	609	99.51	100.00	n/a	BT4 appressoria on teflon library
	YCIA_534643	523742	524338	543	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCIA_534115	523741	524284	490	99.59	100.00	n/a	Botrytis cinerea HortResearch libraries
	B3BC_116_232_E05	523358	524311	845	99.53	100.00	n/a	B0510 Germinated spores on hydrophobic surfaces library
	B4BC_116_243_E07	523363	524323	851	99.29	100.00	n/a	B0510 Germinated spores on bean leaves library
	BcA1_3483_P19	523579	524375	838	98.92	88.42	n/a	BC A1 mycelium
	PD0ABA40YB06FM1	523595	524401	753	99.87	100.00	n/a	BT4 young mycelium library
	PD0ABA31YA14FM1	523633	524320	634	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA10YE04FM1	523584	524292	655	100.00	100.00	n/a	BT4 young mycelium library
	PD0ACA7YA11FM1	523436	524308	764	100.00	100.00	n/a	BT4 mycelium - pH stress library
	PD0AGA6YI09CM1	523685	524319	581	100.00	100.00	n/a	BT4 mycelium - different stresses library
	PD0AHA14YG06CM1	523715	524382	614	99.84	100.00	n/a	BT4 appressoria on teflon library
	PD0AHA17YJ06CM1	523648	524303	602	100.00	100.00	n/a	BT4 appressoria on teflon library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_10_1_bt4ctg_0240_023.Contig1_v5	522280	524401	1812	100.00	100.00	n/a	all_lib_clone_nr:17
sim4_Ss_allest	G786P597RD7.T0	523406	524258	773	88.17	87.45	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P533RE10.T0	523338	524258	837	87.88	89.73	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P58RF7.T0	523414	524258	819	88.36	81.81	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P5106RB5.T0	523406	524258	793	87.94	85.75	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P562RC5.T0	523358	524258	829	86.89	88.30	n/a	Ss ESTs grown as mycelia at neutral pH
	G865P32RO4.T0	523578	524258	749	87.63	74.50	n/a	Ss ESTs in planta set from infected Brassica napus
	G865P311RC4.T0	523586	524258	738	87.82	74.53	n/a	Ss ESTs in planta set from infected Brassica napus
	G786P5106FB5.T0	522389	523305	925	88.04	77.73	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P533FE10.T0	478046	523331	823	88.51	91.98	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P562FC5.T0	478044	523274	889	88.14	79.64	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P597FD7.T0	478046	523260	781	88.66	88.09	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P58FF7.T0	478046	523227	800	88.30	82.25	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P597RD7.T0	523406	524258	773	88.17	87.45	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P533RE10.T0	523338	524258	837	87.88	89.73	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P58RF7.T0	523414	524258	819	88.36	81.81	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P5106RB5.T0	523406	524258	793	87.94	85.75	n/a	Ss ESTs grown as mycelia at neutral pH
	G786P562RC5.T0	523358	524258	829	86.89	88.30	n/a	Ss ESTs grown as mycelia at neutral pH
	G865P32RO4.T0	523578	524258	749	87.63	74.50	n/a	Ss ESTs in planta set from infected Brassica napus
	G865P311RC4.T0	523586	524258	738	87.82	74.53	n/a	Ss ESTs in planta set from infected Brassica napus
	G781P540FB12.T0	490810	544889	774	87.43	90.44	n/a	Ss ESTs grown as developing sclerotia
blastx_uniprot_sprot	P40054	522602	524233	469	63.40	97.87	n/a	D-3-phosphoglycerate dehydrogenase 1 - Saccharomyces cerevisiae (Baker's yeast)
	P40510	522602	524227	469	63.02	97.44	n/a	D-3-phosphoglycerate dehydrogenase 2 - Saccharomyces cerevisiae (Baker's yeast)
	P87228	522602	524206	466	63.25	96.35	n/a	Putative D-3-phosphoglycerate dehydrogenase - Schizosaccharomyces pombe (Fission yeast)
	P0A9T3	522769	524083	410	51.96	87.32	n/a	D-3-phosphoglycerate dehydrogenase - Shigella flexneri
	P0A9T0	522769	524083	410	51.96	87.32	n/a	D-3-phosphoglycerate dehydrogenase - Escherichia coli (strain K12)
	P0A9T1	522769	524083	410	51.96	87.32	n/a	D-3-phosphoglycerate dehydrogenase - Escherichia coli O6
	P0A9T2	522769	524083	410	51.96	87.32	n/a	D-3-phosphoglycerate dehydrogenase - Escherichia coli O157:H7
	P43885	522769	524083	410	53.48	87.56	n/a	D-3-phosphoglycerate dehydrogenase - Haemophilus influenzae
	Q58424	523060	523897	524	42.06	48.09	n/a	D-3-phosphoglycerate dehydrogenase - Methanococcus jannaschii
	O27051	523069	523897	525	40.73	47.24	n/a	D-3-phosphoglycerate dehydrogenase - Methanobacterium thermoautotrophicum
blastx_uniprot_trembl	Q0CA06	522596	524191	466	79.42	95.92	n/a	D-3-phosphoglycerate dehydrogenase 2 - Aspergillus terreus (strain NIH 2624)
	A2R9R5	522575	524251	480	75.95	98.75	n/a	Contig An17c0110 complete genome. - Aspergillus niger
	A1CZL2	522596	524206	472	77.88	95.76	n/a	D-3-phosphoglycerate dehydrogenase - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WTN4	522596	524206	472	77.21	95.76	n/a	D-3-phosphoglycerate dehydrogenase - Aspergillus fumigatus (Sartorya fumigata)
	A1C9P2	522596	524254	474	75.27	98.95	n/a	D-3-phosphoglycerate dehydrogenase - Aspergillus clavatus
	Q2GW64	522596	524254	472	74.30	98.94	n/a	Putative uncharacterized protein - Chaetomium globosum (Soil fungus)
	A6R0F4	522605	524251	488	75.70	94.47	n/a	D-3-phosphoglycerate dehydrogenase 2 - Ajellomyces capsulata (strain NAm1) (Histoplasma capsulatum)
	Q5AS64	522605	524284	548	73.86	87.96	n/a	Putative uncharacterized protein - Emericella nidulans (Aspergillus nidulans)
blastx_FNG30_prot	SS1G_00194.1	522596	524254	470	91.40	98.94	n/a	sclerotinia_sclerotiorum hypothetical protein translation 471 aa
	AN8866	522596	524230	475	77.83	96.84	n/a	Aspergillus nidulans AN8866.3 conserved hypothetical protein translation 476 aa
	gi:70998716:ref:XP_754080.1:	522596	524206	472	77.21	95.76	n/a	Aspergillus fumigatus Af293 D-3-phosphoglycerate dehydrogenase
	CHG07790.1	522596	524254	472	74.30	98.94	n/a	Chaetomium globosum conserved hypothetical protein translation 473 aa
	jgi:Triree:21894	522608	524254	470	75.05	98.09	n/a	Trichoderma reesei
	CIMG_06353.2	522596	524251	470	73.65	98.51	n/a	Coccidioides immitis hypothetical protein translation 471 aa
	FG07468.1	522596	524191	474	74.55	92.83	n/a	fusarium_graminearum conserved hypothetical protein 475 aa
	SNU09415.1	522608	524254	489	70.61	96.73	n/a	Stagonospora nodorum hypothetical protein translation
	NCU01439.2	522596	523903	372	78.75	98.66	n/a	Neurospora crassa conserved hypothetical protein translation 373 aa
	gi:50305309:ref:XP_452614.1	522602	524197	470	68.01	95.11	n/a	Kluyveromyces lactis unnamed protein product
sim4_B0510_genes	BC1G_06095.1	522529	524254	1416	100.00	100.00	n/a	n/a
sim4_SS_genes	SS1G_00194.1	522604	524254	1413	88.39	93.91	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.29	520998	526775	364182	99.90	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.1	522739	523534	2777073	86.68	n/a	n/a	n/a
	SS_supercontig_1.1	523586	523897	2777073	90.71	n/a	n/a	n/a
	SS_supercontig_1.1	523947	524071	2777073	89.60	n/a	n/a	n/a
	SS_supercontig_1.1	522601	522693	2777073	89.25	n/a	n/a	n/a
	SS_supercontig_1.1	522396	522582	2777073	87.23	n/a	n/a	n/a
blat_oligo	botrytisP00049878	524185	524244	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:21.25 . min_over_threshold:2.55 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049880	523630	523689	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:143.47 . min_over_threshold:18.73 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049881	523487	523601	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:113.8 . min_over_threshold:21.88 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049882	523367	523426	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:166.15 . min_over_threshold:28.09 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049883	523095	523154	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:112.47 . min_over_threshold:22.01 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049884	523053	523111	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:97.09 . min_over_threshold:17.92 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049885	522833	522940	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:102.09 . min_over_threshold:15.92 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049886	522638	522750	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:92.64 . min_over_threshold:12.43 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049887	522529	522637	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:35.48 . min_over_threshold:2.77 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00049887	522529	522637	60	n/a	n/a	n/a	array_gene:BofuT4_P017590_1 . max_over_threshold:35.48 . min_over_threshold:2.77 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Current manual annotation

Ortholog