GRS - Genome Report System

Botrytis cinerea T4 GRS

Functional annotation

BofuT4P3000028001

Sequence

Domain/Motif (Interproscan results)

Localization / Targeting

Blast based analysis

Analysis	Hit	start	end	length	Note	Hit coverage	Hit length	Hit pident	Hit pcons	eValue	Hit description
blastp_kegg	bfu:BC1G_12274	1	909	909	n/a	100.00	909	97.25	0.00	0.0	similar to ribonucleoside-diphosphate reductase large chain K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	ssl:SS1G_10937	1	909	909	Gaps:1	100.00	910	94.29	1.54	0.0	ribonucleotide reductase large subunit K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	mgr:MGG_07000	1	909	909	Gaps:14	100.00	909	77.56	8.69	0.0	MG07000.4 similar to ribonucleoside-diphosphate reductase large chain K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	nfi:NFIA_109530	1	909	909	Gaps:50	100.00	859	82.77	7.45	0.0	ribonucleotide reductase large subunit RNR1 putative K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	afm:AFUA_4G06690	1	909	909	Gaps:50	100.00	859	82.54	7.57	0.0	ribonucleotide reductase large subunit Rnr1 (EC:1.17.4.1) K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	ure:UREG_06803	1	909	909	Gaps:47	100.00	884	81.56	6.56	0.0	ribonucleoside-diphosphate reductase large chain 1 K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	cpw:CPC735_003070	1	909	909	Gaps:38	100.00	877	81.64	7.07	0.0	Ribonucleoside-diphosphate reductase large chain putative (EC:1.17.4.1) K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	cim:CIMG_04098	1	909	909	Gaps:54	100.00	893	80.40	6.72	0.0	similar to ribonucleoside-diphosphate reductase large chain K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	act:ACLA_045930	1	909	909	Gaps:52	100.00	859	82.19	6.87	0.0	ribonucleotide reductase large subunit RNR1 putative K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
	afv:AFLA_113250	1	909	909	Gaps:57	100.00	854	82.32	7.96	0.0	ribonucleotide reductase large subunit Rnr1 putative K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
blastp_uniprot_sprot	sp\|Q9UW15\|RIR1_NEUCR	1	909	909	Gaps:26	100.00	929	74.92	7.86	0.0	Ribonucleoside-diphosphate reductase large chain OS Neurospora crassa GN rnr-1 PE 1 SV 2
	sp\|P21524\|RIR1_YEAST	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	Ribonucleoside-diphosphate reductase large chain 1 OS Saccharomyces cerevisiae GN RNR1 PE 1 SV 2
	sp\|P36602\|RIR1_SCHPO	1	758	758	Gaps:2	93.22	811	76.32	11.90	0.0	Ribonucleoside-diphosphate reductase large chain OS Schizosaccharomyces pombe GN cdc22 PE 1 SV 2
	sp\|P21672\|RIR3_YEAST	1	909	909	Gaps:48	100.00	869	65.25	15.42	0.0	Ribonucleoside-diphosphate reductase large chain 2 OS Saccharomyces cerevisiae GN RNR3 PE 1 SV 4
	sp\|P07742\|RIR1_MOUSE	1	758	758	Gaps:1	95.58	792	72.39	14.00	0.0	Ribonucleoside-diphosphate reductase large subunit OS Mus musculus GN Rrm1 PE 1 SV 1
	sp\|P23921\|RIR1_HUMAN	1	758	758	Gaps:1	95.58	792	72.39	14.27	0.0	Ribonucleoside-diphosphate reductase large subunit OS Homo sapiens GN RRM1 PE 1 SV 1
	sp\|Q5R919\|RIR1_PONAB	1	758	758	Gaps:1	95.58	792	72.13	14.40	0.0	Ribonucleoside-diphosphate reductase large subunit OS Pongo abelii GN RRM1 PE 2 SV 1
	sp\|P79732\|RIR1_DANRE	1	758	758	Gaps:1	95.34	794	70.94	13.61	0.0	Ribonucleoside-diphosphate reductase large subunit OS Danio rerio GN rrm1 PE 2 SV 1
	sp\|Q03604\|RIR1_CAEEL	2	758	757	Gaps:1	95.94	788	69.31	14.55	0.0	Ribonucleoside-diphosphate reductase large subunit OS Caenorhabditis elegans GN rnr-1 PE 1 SV 1
	sp\|P48591\|RIR1_DROME	1	756	756	Gaps:1	92.98	812	68.21	14.57	0.0	Ribonucleoside-diphosphate reductase large subunit OS Drosophila melanogaster GN RnrL PE 1 SV 2
blastp_pdb	3k8t_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2zlg_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2zlf_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2eud_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2cvy_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2cvx_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2cvw_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2cvv_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2cvu_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
	2cvt_A	1	909	909	Gaps:43	100.00	888	67.45	12.84	0.0	mol:protein length:888 Ribonucleoside-diphosphate reductase large ch
rpsblast_cdd	gnl\|CDD\|178056	1	766	766	Gaps:18	96.43	813	67.98	13.01	0.0	PLN02437 PLN02437 ribonucleoside--diphosphate reductase large subunit.
	gnl\|CDD\|145819	215	740	526	Gaps:22	100.00	516	55.62	18.02	0.0	pfam02867 Ribonuc_red_lgC Ribonucleotide reductase barrel domain.
	gnl\|CDD\|153088	167	742	576	Gaps:128	100.00	460	60.00	15.87	0.0	cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs found in eukaryotes bacteria and many viruses use a diiron-tyrosyl radical. Class II RNRs found in bacteria bacteriophage algae and archaea use coenzyme B12 (adenosylcobalamin AdoCbl). Class III RNRs found in anaerobic bacteria bacteriophages and archaea use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes prokaryotes viruses and phages) and Ib (which is found in prokaryotes only). It is a tetrameric enzyme of two alpha and two beta subunits this model covers the major part of the alpha or large subunit called R1 in class Ia and R1E in class Ib.
	gnl\|CDD\|162894	145	742	598	Gaps:26	99.84	617	45.62	17.69	0.0	TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase alpha subunit. This model identifies RNR's in diverse clades of bacteria eukaryotes as well as numerous DNA viruses and phage.
	gnl\|CDD\|180884	1	746	746	Gaps:34	79.38	965	40.34	18.28	1e-178	PRK07207 PRK07207 ribonucleotide-diphosphate reductase subunit alpha Validated.
	gnl\|CDD\|73173	39	757	719	Gaps:104	99.69	651	37.90	18.18	1e-156	COG0209 NrdA Ribonucleotide reductase alpha subunit [Nucleotide transport and metabolism].
	gnl\|CDD\|171440	3	747	745	Gaps:58	72.75	1046	37.45	18.79	1e-145	PRK12365 PRK12365 ribonucleotide-diphosphate reductase subunit alpha Provisional.
	gnl\|CDD\|180610	3	821	819	Gaps:60	99.39	822	33.17	17.63	1e-128	PRK06539 PRK06539 ribonucleotide-diphosphate reductase subunit alpha Validated.
	gnl\|CDD\|181429	1	755	755	Gaps:159	98.86	789	34.10	18.72	1e-119	PRK08447 PRK08447 ribonucleotide-diphosphate reductase subunit alpha Validated.
	gnl\|CDD\|181700	7	742	736	Gaps:105	96.58	761	33.33	18.37	1e-110	PRK09209 PRK09209 ribonucleotide-diphosphate reductase subunit alpha Validated.
rpsblast_kog	gnl\|CDD\|36328	1	758	758	Gaps:1	95.10	796	76.22	11.76	0.0	KOG1112 KOG1112 KOG1112 Ribonucleotide reductase alpha subunit [Nucleotide transport and metabolism].

Other analysis

Genome Mapping at gene locus

Analysis	Hit name	RefStart	RefEnd	Hit length	Hit identity	Hit coverage	eValue	Hit description
RepeatMasker_ALL_Repbase	no results
TRF	no results
REPET	no results
sim4_Bot_allest	YCMA_581756	540188	540880	693	99.57	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCGA_532863	540557	541217	661	99.85	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581812	539765	540405	641	99.84	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581701	540480	541114	635	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581839	539174	539806	633	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581811	539767	540405	640	99.69	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581814	538912	539539	628	99.68	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581813	538908	539540	635	99.53	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581755	540320	540898	579	99.65	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581827	539247	539804	558	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581838	539265	539816	552	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581702	540844	541115	272	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	B1BC_045_006_H02	540831	541559	655	99.24	100.00	n/a	BC ATCC 58025 (G3)
	AL112323	538953	539652	700	99.57	100.00	n/a	BT4 Mycelium - nitrate starvation library
	AL112317	539013	539652	640	99.69	100.00	n/a	BT4 Mycelium - nitrate starvation library
	AL111056	539488	540125	638	99.22	100.00	n/a	BT4 Mycelium - nitrate starvation library
	PD0ABA38YE07FM1	539047	539731	685	100.00	100.00	n/a	BT4 young mycelium library
	YCMA_581757	538511	539145	586	99.66	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581703	538450	538833	334	97.31	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581758	538511	539084	524	99.24	100.00	n/a	Botrytis cinerea HortResearch libraries
	PD0ADA9YA21CM1	538513	539190	628	99.84	100.00	n/a	B0510 mycelium - carbon sources library
	PD0ABA6YN05FM1	538711	539461	701	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA34YO22FM1	538657	539392	686	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA1YB13NM1r	538461	539386	876	100.00	100.00	n/a	BT4 young mycelium library
	PD0ABA6YN05NM1r	538462	539309	798	100.00	100.00	n/a	BT4 young mycelium library
	PD0AGA18YC14CM1	538680	539403	674	99.85	100.00	n/a	BT4 mycelium - different stresses library
	PD0AGA6YK04CM1	538645	539307	613	99.35	100.00	n/a	BT4 mycelium - different stresses library
	PD0AHA20YL23CM1	538705	539368	614	99.67	100.00	n/a	BT4 appressoria on teflon library
	YCKA_558876	541018	541806	660	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_567007	541021	541814	665	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCKA_565238	541021	541801	652	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581650	541061	541813	624	99.84	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_561716	541104	541731	499	100.00	100.00	n/a	Botrytis cinerea HortResearch libraries
	YCMA_581852	541269	541813	416	99.76	100.00	n/a	Botrytis cinerea HortResearch libraries
	PD0ABA1YB13FM1	540857	541792	808	99.88	100.00	n/a	BT4 young mycelium library
	PD0ABA28YP16FM1	540928	541827	771	99.87	100.00	n/a	BT4 young mycelium library
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_3_1_bt4ctg_0126_004.Contig1_v5	538461	540125	1615	100.00	100.00	n/a	all_lib_clone_nr:11
sim4_Bot_allest4_clctg	CL_bt4_SuperContig_3_1_bt4ctg_0126_005.Contig1_v5	540857	541827	845	99.64	100.00	n/a	all_lib_clone_nr:3
sim4_Ss_allest	G787P569RA6.T0	539059	539890	838	89.34	99.64	n/a	Ss ESTs grown as developing apothecia
sim4_Ss_allest	G787P569FA6.T0	538452	539324	875	86.26	80.69	n/a	Ss ESTs grown as developing apothecia
blastx_uniprot_sprot	Q9UW15	538818	541322	929	76.95	91.07	n/a	Ribonucleoside-diphosphate reductase large chain - Neurospora crassa
	P36602	539226	541322	811	75.90	85.94	n/a	Ribonucleoside-diphosphate reductase large chain - Schizosaccharomyces pombe (Fission yeast)
	P23921	539178	541322	792	72.09	90.03	n/a	Ribonucleoside-diphosphate reductase large subunit - Homo sapiens (Human)
	Q5R919	539178	541322	792	71.81	90.03	n/a	Ribonucleoside-diphosphate reductase large subunit - Pongo pygmaeus (Orangutan)
	P07742	539175	541322	792	71.61	90.28	n/a	Ribonucleoside-diphosphate reductase large subunit - Mus musculus (Mouse)
	P79732	539226	541322	794	71.92	87.91	n/a	Ribonucleoside-diphosphate reductase large subunit - Danio rerio (Zebrafish) (Brachydanio rerio)
	Q03604	539226	541322	788	69.77	88.58	n/a	Ribonucleoside-diphosphate reductase large subunit - Caenorhabditis elegans
	P21524	538962	541322	888	67.38	89.75	n/a	Ribonucleoside-diphosphate reductase large chain 1 - Saccharomyces cerevisiae (Baker's yeast)
	P48591	539232	541322	812	68.97	85.71	n/a	Ribonucleoside-diphosphate reductase large subunit - Drosophila melanogaster (Fruit fly)
	P21672	539202	541322	869	70.00	81.70	n/a	Ribonucleoside-diphosphate reductase large chain 2 - Saccharomyces cerevisiae (Baker's yeast)
blastx_uniprot_trembl	A1CXV7	539022	541322	859	82.64	89.17	n/a	Ribonucleoside-diphosphate reductase - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
	Q4WNR5	539022	541322	859	82.64	89.17	n/a	Ribonucleoside-diphosphate reductase - Aspergillus fumigatus (Sartorya fumigata)
	A4R194	538812	541322	909	79.45	92.08	n/a	Ribonucleoside-diphosphate reductase - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea)
	Q0UTU9	538812	541322	903	78.94	92.03	n/a	Ribonucleoside-diphosphate reductase - Phaeosphaeria nodorum (Septoria nodorum)
	Q2GV01	538812	541322	912	78.81	92.11	n/a	Ribonucleoside-diphosphate reductase - Chaetomium globosum (Soil fungus)
	Q1E015	539040	541322	893	83.53	85.67	n/a	Ribonucleoside-diphosphate reductase - Coccidioides immitis
	Q0CL74	539130	541322	886	85.73	83.07	n/a	Ribonucleoside-diphosphate reductase - Aspergillus terreus (strain NIH 2624)
	Q19K46	538806	541322	923	76.59	92.09	n/a	Ribonucleoside-diphosphate reductase - Neurospora crassa
blastx_FNG30_prot	SS1G_10937.1	538812	541576	910	96.32	98.57	n/a	sclerotinia_sclerotiorum Ribonucleotide reductase large subunit translation 911 aa
	gi:70994760:ref:XP_752157.1:	539022	541558	859	83.27	95.34	n/a	Aspergillus fumigatus Af293 ribonucleotide reductase large subunit Rnr1
	AN4380	539067	541591	865	83.97	93.76	n/a	Aspergillus nidulans AN4380.3 ribonucleoside-diphosphate reductase large chain translation 866 aa
	CIMG_04098.2	539040	541570	893	83.94	92.05	n/a	Coccidioides immitis hypothetical protein similar to ribonucleoside-diphosphate reductase large chain translation 894 aa
	jgi:Triree:8877	538818	541322	882	80.56	93.88	n/a	Trichoderma reesei
	MGG_07000.5	538812	541322	909	79.45	92.08	n/a	magnaporthe_grisea hypothetical protein similar to ribonucleoside-diphosphate reductase large chain translation 910 aa
	SNU04815.1	538812	541322	903	78.94	92.03	n/a	Stagonospora nodorum hypothetical protein translation
	CHG08203.1	538812	541322	912	78.81	92.11	n/a	Chaetomium globosum ribonucleoside-diphosphate reductase large chain un-24gene translation 913 aa
	FG05174.1	538812	541328	913	78.91	90.36	n/a	fusarium_graminearum hypothetical protein 914 aa
	NCU03539.2	538818	541322	929	76.95	91.07	n/a	Neurospora crassa ribonucleoside-diphosphate reductase large chain un-24gene [MIPS] translation 930 aa
sim4_B0510_genes	BC1G_12274.1	538720	541628	2730	99.96	100.00	n/a	n/a
sim4_SS_genes	SS1G_10937.1	538720	541559	2733	90.17	99.38	n/a	n/a
sim4_SS_genes	SS1G_10937.1	538720	541559	2733	90.17	99.38	n/a	n/a
blastn_b0510_supercontig	B0510_supercontig_1.96	538664	545192	160851	99.97	n/a	n/a	n/a
blastn_SS_supercontig	SS_supercontig_1.16	539146	541344	1119265	91.18	n/a	n/a	n/a
	SS_supercontig_1.16	538807	539078	1119265	87.50	n/a	n/a	n/a
	SS_supercontig_1.16	541393	541576	1119265	86.41	n/a	n/a	n/a
	SS_supercontig_1.16	538713	538765	1119265	98.11	n/a	n/a	n/a
blat_oligo	botrytisP00043752	540169	540228	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:86.71 . min_over_threshold:14.18 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043754	539741	539800	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:50.39 . min_over_threshold:5.65 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043755	539677	539736	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:46.17 . min_over_threshold:5.97 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043756	539605	539664	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:81.97 . min_over_threshold:14.17 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043757	539380	539439	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:43.83 . min_over_threshold:5.17 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043758	539251	539310	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:91.23 . min_over_threshold:9.75 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043759	539140	539199	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:57.52 . min_over_threshold:5.29 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043760	539088	539147	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:63.34 . min_over_threshold:7.79 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0
	botrytisP00043761	538919	538978	60	n/a	n/a	n/a	array_gene:BofuT4_P009330_1 . max_over_threshold:125.64 . min_over_threshold:25.25 . percent_hyb_over_threshold:100 . flag_cross_hyb_gene:0 . flag_cross_hyb_organism:0

Analysis

Type

Start

End

Ortholog

Current manual annotation

Functional edition

Gene ID:

Gene Name:

Synonym:

PMID:

Functional validation status

Not validate Validate

Evidence Code :

Gene function:

Comments:

Gene Ontology:

Search ontology by term or ID (for this enter only number) :

Gene prediction at gene locus

TreeView