Vitis vinifera (12x) Vitaroma Genome Browser (registered): 40 kbp from chr18:667,326..707,325

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New names of gene in 12X version according to the genome release at EMBL : GSVIVG00 to GSVIVG01
New tracks available : Gene prediction (named V1) produced by CRIBI on the 12X sequence assembly. This V1 annotation is divided in V1_NR (non repetitive sequences) and V1_R (repetitive sequences)

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Examples: chr15:5282664..5322663, GSVIVG01032605001, EGT00018252001, SNAPVvG00016689001, GWSUNIT02500482001, VVII52, VV40024H100E01, Vv_10003495, Vv10s0116g00040, GSVIVG01001153001, NEW20, VVTPS65, SNP_Vv_1272338, indel_Vv_1272543, SNP_Vv_1273469, PN40024_heterozygous_SNPs_chr1_4012677, PN40024_seqErr_SNPs_chr1_1252920.

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V1_R transcript
V1_R transcript

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V1_NR transcript
V1_NR transcript

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Geneid
Geneid

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Terpene synthase (TPS)
Terpene synthase (TPS)

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Marker
Marker

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Tracks
Tracks

Abinitio Prediction
Abinitio Prediction
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EuGene (ab initio) Geneid SNAP

Expression Level V1.0 Qiagen
Expression Level V1.0 Qiagen
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Transcriptomic experiments (Full ratio)

Gene Manual Curation
Gene Manual Curation
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Terpene synthase (TPS)

Gene annotations
Gene annotations
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Genoscope annotation (Gaze) V1_NR polypeptide V1_R polypeptide

Transcript phases (Gaze) V1_NR transcript V1_R transcript

General
General
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BAC clones PN40024 Marker Scaffold

Microarray Probes
Microarray Probes
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Oligoset V1.0 Qiagen

Polymorphism
Polymorphism
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Alleles Tower (indels) of BerrySize project Alleles Tower (SNPs) of Putative sequencing errors of PN40024 SNP (GnpSNP) of BerrySize project

Alleles Tower (indels) of Fleshless project Alleles Tower (SNPs) of Residual Heterozygosity of PN40024 SNP (GnpSNP) of Fleshless project

Alleles Tower (SNPs) of BerrySize project indels (GnpSNP) of BerrySize project SNPs: Putative sequencing errors of PN40024

Alleles Tower (SNPs) of Fleshless project indels (GnpSNP) of Fleshless project SNPs: Residual Heterozygosity of PN40024 (GnpSNP)

RNA-Seq Data
RNA-Seq Data
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Carmenere baies courant maturation Coverage Gewurztraminer baies vertes Coverage Riesling baies courant maturation Coverage

Carmenere baies courant maturation Short Reads Gewurztraminer baies vertes Short Reads Riesling baies courant maturation Short Reads

Carmenere baies vertes Coverage Petit verdot baies courant maturation Coverage Riesling baies vertes Coverage

Carmenere baies vertes Short Reads Petit verdot baies courant maturation Short Reads Riesling baies vertes Short Reads

Gewurztraminer baies courant maturation Coverage Petit verdot baies vertes Coverage

Gewurztraminer baies courant maturation Short Reads Petit verdot baies vertes Short Reads

Repeats
Repeats
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Repeats (RepeatMasker) Tandem_repeats (Tandem Repeats Finder)

Short Reads and ESTs
Short Reads and ESTs
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G-Mo.R-Se models (all multiexonic) Vitis vinifera cDNA Vitis vinifera EST contig (454 Short Reads)

Redundant Vitis vinifera public EST Vitis vinifera cDNA contig Vitis vinifera public EST

Similarity
Similarity
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Genewise (Uniprot)

MRNA
MRNA
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NCBI (24395) public mRNA (Vitis sp.)

Overview
Overview
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Carmenere baies courant maturation Coverage Markers Riesling baies vertes Coverage

Carmenere baies vertes Coverage Petit verdot baies courant maturation Coverage Scaffold

Gewurztraminer baies courant maturation Coverage Petit verdot baies vertes Coverage

Gewurztraminer baies vertes Coverage Riesling baies courant maturation Coverage

Analysis
Analysis
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DNA/GC_content Restriction Sites

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Generic Genome Browser version 2.33. For questions about the data at this site, please send mail to urgi-support@versailles.inra.fr..

Landmark or Region: Examples: chr15:5282664..5322663, GSVIVG01032605001, EGT00018252001, SNAPVvG00016689001, GWSUNIT02500482001, VVII52, VV40024H100E01, Vv_10003495, Vv10s0116g00040, GSVIVG01001153001, NEW20, VVTPS65, SNP_Vv_1272338, indel_Vv_1272543, SNP_Vv_1273469, PN40024_heterozygous_SNPs_chr1_4012677, PN40024_seqErr_SNPs_chr1_1252920.
Data Source	Scroll/Zoom: Flip

Genoscope annotation (Gaze)	V1_NR polypeptide	V1_R polypeptide
Transcript phases (Gaze)	V1_NR transcript	V1_R transcript

Alleles Tower (indels) of BerrySize project	Alleles Tower (SNPs) of Putative sequencing errors of PN40024	SNP (GnpSNP) of BerrySize project
Alleles Tower (indels) of Fleshless project	Alleles Tower (SNPs) of Residual Heterozygosity of PN40024	SNP (GnpSNP) of Fleshless project
Alleles Tower (SNPs) of BerrySize project	indels (GnpSNP) of BerrySize project	SNPs: Putative sequencing errors of PN40024
Alleles Tower (SNPs) of Fleshless project	indels (GnpSNP) of Fleshless project	SNPs: Residual Heterozygosity of PN40024 (GnpSNP)

Carmenere baies courant maturation Coverage	Gewurztraminer baies vertes Coverage	Riesling baies courant maturation Coverage
Carmenere baies courant maturation Short Reads	Gewurztraminer baies vertes Short Reads	Riesling baies courant maturation Short Reads
Carmenere baies vertes Coverage	Petit verdot baies courant maturation Coverage	Riesling baies vertes Coverage
Carmenere baies vertes Short Reads	Petit verdot baies courant maturation Short Reads	Riesling baies vertes Short Reads
Gewurztraminer baies courant maturation Coverage	Petit verdot baies vertes Coverage
Gewurztraminer baies courant maturation Short Reads	Petit verdot baies vertes Short Reads

G-Mo.R-Se models (all multiexonic)	Vitis vinifera cDNA	Vitis vinifera EST contig (454 Short Reads)
Redundant Vitis vinifera public EST	Vitis vinifera cDNA contig	Vitis vinifera public EST

Carmenere baies courant maturation Coverage	Markers	Riesling baies vertes Coverage
Carmenere baies vertes Coverage	Petit verdot baies courant maturation Coverage	Scaffold
Gewurztraminer baies courant maturation Coverage	Petit verdot baies vertes Coverage
Gewurztraminer baies vertes Coverage	Riesling baies courant maturation Coverage

Show grid	Image Width 450 640 800 1024	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp)